RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 FOXG1P55316 489 aaPredicted RBP18.53■□□□□ 0.56
TRIM54-202ENST00000380075 SLC25A26Q70HW3 274 aa18.53■□□□□ 0.56
TRIM54-202ENST00000380075 CALHM1Q8IU99 346 aa18.53■□□□□ 0.56
TRIM54-202ENST00000380075 STOML3Q8TAV4 291 aa18.53■□□□□ 0.56
TRIM54-202ENST00000380075 WDYHV1Q96HA8 205 aa18.53■□□□□ 0.56
TRIM54-202ENST00000380075 DNTTIP1Q9H147 329 aa18.53■□□□□ 0.56
TRIM54-202ENST00000380075 POM121CA8CG34 1229 aa18.52■□□□□ 0.56
TRIM54-202ENST00000380075 F5H0A9 414 aaPredicted RBP18.52■□□□□ 0.56
TRIM54-202ENST00000380075 NAAAQ02083 359 aa18.52■□□□□ 0.56
TRIM54-202ENST00000380075 IGFL3Q6UXB1 125 aa18.52■□□□□ 0.56
TRIM54-202ENST00000380075 POC1AQ8NBT0 407 aa18.52■□□□□ 0.56
TRIM54-202ENST00000380075 PIK3IP1Q96FE7 263 aa18.52■□□□□ 0.56
TRIM54-202ENST00000380075 ZDHHC11Q9H8X9 412 aa18.52■□□□□ 0.56
TRIM54-202ENST00000380075 DNAJB11Q9UBS4 358 aa18.52■□□□□ 0.56
TRIM54-202ENST00000380075 LIPGQ9Y5X9 500 aa18.52■□□□□ 0.56
TRIM54-202ENST00000380075 SMG1Q96Q15 3661 aaKnown RBP18.52■□□□□ 0.55
TRIM54-202ENST00000380075 KRBOX1C9JBD0 128 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 F8VVB4 439 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 F8VWA3 439 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 OPRM1P35372 400 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 IL15RAQ13261 267 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 C3AR1Q16581 482 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 KMT2BQ9UMN6 2715 aaPredicted RBP18.51■□□□□ 0.55
TRIM54-202ENST00000380075 RTTNQ86VV8 2226 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 ZNF503-AS2A6NEH8 195 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 A8MXK9 166 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 FGF2P09038 288 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 APLNRP35414 380 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 SRSF7Q16629 238 aaKnown RBP eCLIP18.51■□□□□ 0.55
TRIM54-202ENST00000380075 FBXW9Q5XUX1 488 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 MKXQ8IYA7 352 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 OR5A2Q8NGI9 324 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 OR1K1Q8NGR3 316 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 ZNF581Q9P0T4 197 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 KCNIP3Q9Y2W7 256 aa18.51■□□□□ 0.55
TRIM54-202ENST00000380075 CNTRLQ7Z7A1 2325 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 TNRC6AQ8NDV7 1962 aaKnown RBP18.5■□□□□ 0.55
TRIM54-202ENST00000380075 SLC22A20A6NK97 555 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 ZNF728P0DKX0 622 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 GLP1RP43220 463 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 UCP3P55916 312 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 FGF12P61328 243 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 SNTB1Q13884 538 aaKnown RBP18.5■□□□□ 0.55
TRIM54-202ENST00000380075 PAN3Q58A45 887 aaKnown RBP18.5■□□□□ 0.55
TRIM54-202ENST00000380075 BEX5Q5H9J7 111 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 Q6ZS49 121 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 ZADH2Q8N4Q0 377 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 OR10C1Q96KK4 312 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 DEFB127Q9H1M4 99 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 OR7C1O76099 320 aaPredicted RBP18.5■□□□□ 0.55
TRIM54-202ENST00000380075 SLC22A25Q6T423 547 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 RBMXL3Q8N7X1 1067 aaKnown RBP18.5■□□□□ 0.55
TRIM54-202ENST00000380075 NAXEQ8NCW5 288 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 OR5L1Q8NGL2 311 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 HPSE2Q8WWQ2 592 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 GALNT14Q96FL9 552 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 AQP10Q96PS8 301 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 HIST1H2AAQ96QV6 131 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 ZNF442Q9H7R0 627 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 STARD10Q9Y365 291 aa18.5■□□□□ 0.55
TRIM54-202ENST00000380075 H0YIZ8 118 aa18.49■□□□□ 0.55
TRIM54-202ENST00000380075 IFNA21P01568 189 aa18.49■□□□□ 0.55
TRIM54-202ENST00000380075 CCL2P13500 99 aa18.49■□□□□ 0.55
TRIM54-202ENST00000380075 TPT1P13693 172 aaKnown RBP18.49■□□□□ 0.55
TRIM54-202ENST00000380075 TNFSF10P50591 281 aa18.49■□□□□ 0.55
TRIM54-202ENST00000380075 MPV17LQ2QL34 196 aa18.49■□□□□ 0.55
TRIM54-202ENST00000380075 BVESQ8NE79 360 aa18.49■□□□□ 0.55
TRIM54-202ENST00000380075 ZNF75AQ96N20 296 aa18.49■□□□□ 0.55
TRIM54-202ENST00000380075 GLRX2Q9NS18 164 aa18.49■□□□□ 0.55
TRIM54-202ENST00000380075 PRR13Q9NZ81 148 aa18.49■□□□□ 0.55
TRIM54-202ENST00000380075 PRSS50Q9UI38 385 aa18.49■□□□□ 0.55
TRIM54-202ENST00000380075 MPC1Q9Y5U8 109 aa18.49■□□□□ 0.55
TRIM54-202ENST00000380075 J3QW42 95 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 HAAOP46952 286 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 ABCA11PQ4W5N1 156 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 BCL2L2Q92843 193 aaPredicted RBP18.48■□□□□ 0.55
TRIM54-202ENST00000380075 SHARPINQ9H0F6 387 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 PLK3Q9H4B4 646 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 SPRR3Q9UBC9 169 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 ATRXP46100 2492 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 CD300LBA8K4G0 201 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 MPTX1A8MV57 137 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 IL18BPO95998 194 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 HOXB5P09067 269 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 NPBWR2P48146 333 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 PIGPP57054 158 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 RBM39Q14498 530 aaKnown RBP18.48■□□□□ 0.55
TRIM54-202ENST00000380075 LINC00596Q86U02 117 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 SLC38A6Q8IZM9 456 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 RELL2Q8NC24 303 aaPredicted RBP18.48■□□□□ 0.55
TRIM54-202ENST00000380075 SUN5Q8TC36 379 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 MOB3AQ96BX8 217 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 GMPPAQ96IJ6 420 aaPredicted RBP18.48■□□□□ 0.55
TRIM54-202ENST00000380075 DMRTA2Q96SC8 542 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 SYT3Q9BQG1 590 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 SUCNR1Q9BXA5 334 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 NAA60Q9H7X0 242 aa18.48■□□□□ 0.55
TRIM54-202ENST00000380075 ANKRD30BLA7E2S9 258 aa18.47■□□□□ 0.55
TRIM54-202ENST00000380075 SFTPCP11686 197 aa18.47■□□□□ 0.55
TRIM54-202ENST00000380075 GPM6AP51674 278 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms