RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ZNF806P0C7X5 589 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 OPRM1P35372 400 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 RRADP55042 308 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 PIGPP57054 158 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 HERV-K104P61576 105 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 MPV17LQ2QL34 196 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 HES3Q5TGS1 186 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 ZNF585AQ6P3V2 769 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 LINC00596Q86U02 117 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 FAM185AQ8N0U4 392 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 ZFP62Q8NB50 900 aaPredicted RBP12.81□□□□□ -0.36
NUP54-217ENST00000514987 OR56B2PQ8NGI1 322 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 OR5A2Q8NGI9 324 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 NANOS1Q8WY41 292 aaKnown RBP12.81□□□□□ -0.36
NUP54-217ENST00000514987 MOB3AQ96BX8 217 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 PLK3Q9H4B4 646 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 ZNF442Q9H7R0 627 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 PLEKHA2Q9HB19 425 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 A0A096LPE4 126 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 A0A1W2PPZ6 126 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 MPTX1A8MV57 137 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 LGALS8O00214 317 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 HLA-HP01893 362 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 CD79AP11912 226 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 FCGR2CP31995 323 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 S100A10P60903 97 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 FGF12P61328 243 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 RAB1AP62820 205 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 TAGLNQ01995 201 aaKnown RBP12.81□□□□□ -0.36
NUP54-217ENST00000514987 GGNBP1Q5YKI7 109 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 CALHM1Q8IU99 346 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 OR5L1Q8NGL2 311 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 SLC5A7Q9GZV3 580 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 PRR13Q9NZ81 148 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 FBXO9Q9UK97 447 aaPredicted RBP12.81□□□□□ -0.36
NUP54-217ENST00000514987 WDR87Q6ZQQ6 2873 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 OR7C1O76099 320 aaPredicted RBP12.8□□□□□ -0.36
NUP54-217ENST00000514987 CCNOP22674 350 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 CD82P27701 267 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 PRSS12P56730 875 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 SRPXP78539 464 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 TMEM187Q14656 261 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 DHRS13Q6UX07 377 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 TFAP2EQ6VUC0 442 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 LGI3Q8N145 548 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 IL22RA1Q8N6P7 574 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 RTN4IP1Q8WWV3 396 aaPredicted RBP12.8□□□□□ -0.36
NUP54-217ENST00000514987 ARL11Q969Q4 196 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 SAT2Q96F10 170 aaPredicted RBP12.8□□□□□ -0.36
NUP54-217ENST00000514987 POM121L2Q96KW2 1035 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 RSRP1Q9BUV0 290 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 LDAHQ9H6V9 325 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 SPACA1Q9HBV2 294 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 ZC4H2Q9NQZ6 224 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 IL17BQ9UHF5 180 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 MPC1Q9Y5U8 109 aa12.8□□□□□ -0.36
NUP54-217ENST00000514987 ZDBF2Q9HCK1 2354 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 VCANP13611 3396 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 TRAPPC2LH3BP13 241 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 H7C1Q1 480 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 K7EPK0 472 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 DEDDO75618 318 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 GAPDHP04406 335 aaKnown RBP12.79□□□□□ -0.36
NUP54-217ENST00000514987 APLNRP35414 380 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 SOX8P57073 446 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 C9orf135Q5VTT2 229 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 LIAT1Q6ZQX7 453 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 FAM71E2Q8N5Q1 922 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 TMEM178AQ8NBL3 297 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 GTF3AQ92664 365 aaKnown RBP12.79□□□□□ -0.36
NUP54-217ENST00000514987 EXTL1Q92935 676 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 TOMM40LQ969M1 308 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 RIMS4Q9H426 269 aaPredicted RBP12.79□□□□□ -0.36
NUP54-217ENST00000514987 RHOFQ9HBH0 211 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 PCDHB10Q9UN67 800 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 ZNF175Q9Y473 711 aa12.79□□□□□ -0.36
NUP54-217ENST00000514987 TNRC6AQ8NDV7 1962 aaKnown RBP12.79□□□□□ -0.36
NUP54-217ENST00000514987 MSGN1A6NI15 193 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 OR5B21A6NL26 309 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 ANKRD30BLA7E2S9 258 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 J3QW42 95 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 DIRAS3O95661 229 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 GLAP06280 429 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 CTXN2P0C2S0 81 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 HKR1P10072 659 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 RPL12P30050 165 aaKnown RBP12.78□□□□□ -0.36
NUP54-217ENST00000514987 PRRX2Q99811 253 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 LIME1Q9H400 295 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 SLC2A9Q9NRM0 540 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 ASF1BQ9NVP2 202 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 ZNF581Q9P0T4 197 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 RCC2Q9P258 522 aaKnown RBP12.78□□□□□ -0.36
NUP54-217ENST00000514987 RTTNQ86VV8 2226 aa12.78□□□□□ -0.36
NUP54-217ENST00000514987 KIR2DS1A0A191URI9 304 aa12.77□□□□□ -0.36
NUP54-217ENST00000514987 ZNF732B4DXR9 585 aa12.77□□□□□ -0.36
NUP54-217ENST00000514987 E5RGE8 158 aa12.77□□□□□ -0.36
NUP54-217ENST00000514987 JTBO76095 146 aa12.77□□□□□ -0.36
NUP54-217ENST00000514987 BCL3P20749 454 aa12.77□□□□□ -0.36
NUP54-217ENST00000514987 KIR2DS4P43632 304 aa12.77□□□□□ -0.36
NUP54-217ENST00000514987 HAAOP46952 286 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms