RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	SLC22A1	O15245	554 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	TMPRSS2	O15393	492 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	PIN1P1	O15428	100 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	NDUFB3	O43676	98 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	RHBDL1	O75783	438 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	RGS9	O75916	674 aa	Predicted RBP	4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	SCGN	O76038	276 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	TPPP	O94811	219 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	NXPH2	O95156	264 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	CYB5R3	P00387	301 aa	Predicted RBP	4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	PLAT	P00750	562 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	TGFA	P01135	160 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	GRP	P07492	148 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	OCM	P0CE72	109 aa	Predicted RBP	4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	LYNX1	P0DP58	116 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	GTF2F2	P13984	249 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	AMY2B	P19961	511 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	GUCA2A	Q02747	115 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	ARL6IP1	Q15041	203 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	PDCD1	Q15116	288 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	CHRFAM7A	Q494W8	412 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	ACSM3	Q53FZ2	586 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	HSD17B12	Q53GQ0	312 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	ARMCX4	Q5H9R4	360 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	LY6G6F	Q5SQ64	297 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	DDI2	Q5TDH0	399 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	DCAF12L2	Q5VW00	463 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	GLT8D1	Q68CQ7	371 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	NCR3LG1	Q68D85	454 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	TMEM91	Q6ZNR0	172 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	SLC16A12	Q6ZSM3	486 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	ZNF826P	Q6ZT77	177 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	KCTD8	Q6ZWB6	473 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	SLC25A26	Q70HW3	274 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	CMTM4	Q8IZR5	234 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	DEFB108B	Q8NET1	73 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	NANP	Q8TBE9	248 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	RPL3L	Q92901	407 aa	Known RBP	4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	MUL1	Q969V5	352 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	C1orf147	Q96MC9	270 aa	Predicted RBP	4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	GAFA1	Q96PS6	74 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	FAM192A	Q9GZU8	254 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	SHARPIN	Q9H0F6	387 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	SMURF1	Q9HCE7	757 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	TCF7L1	Q9HCS4	588 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	RAB9B	Q9NP90	201 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	GPR173	Q9NS66	373 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	UFSP2	Q9NUQ7	469 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	HIF1AN	Q9NWT6	349 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	DCAF16	Q9NXF7	216 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	TAS2R3	Q9NYW6	316 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	CTSZ	Q9UBR2	303 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	DNAJB11	Q9UBS4	358 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	SLC25A10	Q9UBX3	287 aa	Predicted RBP	4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	RPUSD1	Q9UJJ7	312 aa	Known RBP	4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	GSTK1	Q9Y2Q3	226 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	UBE2J1	Q9Y385	318 aa	Predicted RBP	4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	MAB21L2	Q9Y586	359 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	N6AMT1	Q9Y5N5	214 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	LINC00312	Q9Y6C7	94 aa		4.22	□□□□□ -1.73
HDAC6-223	ENST00000480525	ANK3	Q12955	4377 aa	Known RBP	4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	LOC105371242	A0A075B767	164 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525		A0A0A6YYH2	397 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	IGKV1-12	A0A0C4DH73	117 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	FAM230A	A0A1W2PPH8	454 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525		A6NJ64	397 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	C17orf98	A8MV24	154 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	AIP	O00170	330 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	SLC17A2	O00624	439 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	DVL1	O14640	695 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	ADAM20	O43506	726 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	SYNGR1	O43759	233 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	HAND1	O96004	215 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	IFNA2	P01563	188 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	IGKV1D-12	P01611	117 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	TK1	P04183	234 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	HCK	P08631	526 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	MMP9	P14780	707 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	ZNF16	P17020	682 aa	Predicted RBP	4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	EGR1	P18146	543 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	RAB6A	P20340	208 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	PRTN3	P24158	256 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	ZFP36	P26651	326 aa	Known RBP	4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	CD34	P28906	385 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	IL2RG	P31785	369 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	PRDX2	P32119	198 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	GP2	P55259	537 aa	Known RBP	4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	RBM11	P57052	281 aa	Known RBP	4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	RBM39	Q14498	530 aa	Known RBP	4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	SSX1	Q16384	188 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	CARTPT	Q16568	116 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	SRSF7	Q16629	238 aa	Known RBP eCLIP	4.21	□□□□□ -1.74	1e-6	■■■□□ 17.2
HDAC6-223	ENST00000480525	FAM120AOS	Q5T036	256 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	AVPI1	Q5T686	147 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	LIPK	Q5VXJ0	399 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	TRAT1	Q6PIZ9	186 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	LRRTM1	Q86UE6	522 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	FAM89B	Q8N5H3	189 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	TMEM86B	Q8N661	226 aa		4.21	□□□□□ -1.74
HDAC6-223	ENST00000480525	C8orf31	Q8N9H6	132 aa		4.21	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms