RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 A0A1B0GTI1 187 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 A0A1W2PPH5 198 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 BTBD17A6NE02 478 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 ANKRD61A6NGH8 418 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 RFPL4AA6NLU0 287 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 RFPL4AL1F8VTS6 287 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 RNASEK-C17orf49H0YIS7 233 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 SLC1A7O00341 560 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 NPFFO15130 113 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 SYT7O43581 403 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 NOS1APO75052 506 aaPredicted RBP5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 GATBO75879 557 aaKnown RBP5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 NXPH2O95156 264 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 NDUFA7O95182 113 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 APOL3O95236 402 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 IGHV4-59P01825 116 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 ALPLP05186 524 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 FBP1P09467 338 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 PGA5P0DJD9 388 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 MDKP21741 143 aaPredicted RBP5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 OMGP23515 440 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 MPZP25189 248 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 UBE2E1P51965 193 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 CAPZA1P52907 286 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 RAG2P55895 527 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 CD83Q01151 205 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 IL24Q13007 206 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 KPNB1Q14974 876 aaKnown RBP5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 ODF4Q2M2E3 257 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 MZT2AQ6P582 158 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 CCDC121Q6ZUS5 278 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 FAM220AQ7Z4H9 259 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 CATSPERDQ86XM0 798 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 OR8H2Q8N162 312 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 Q8N7P7 452 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 OR5D13Q8NGL4 314 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 TRUB1Q8WWH5 349 aaKnown RBP5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 RORBQ92753 470 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 TAF15Q92804 592 aaKnown RBP eCLIP5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 C10orf35Q96D05 121 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 SDSLQ96GA7 329 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 NRIP2Q9BQI9 281 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 ADI1Q9BV57 179 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 PKIBQ9C010 78 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 SLITRK2Q9H156 845 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 ZNF696Q9H7X3 374 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 ELL3Q9HB65 397 aaPredicted RBP5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 BEX1Q9HBH7 125 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 USE1Q9NZ43 259 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 C1RLQ9NZP8 487 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 GNG8Q9UK08 70 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 SLC7A11Q9UPY5 501 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 MAB21L2Q9Y586 359 aa5.56□□□□□ -1.52
CCDC88A-213ENST00000476903 hCG_1809904A0A1W2PP81 198 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 A0A1W2PPE2 198 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 FAM230AA0A1W2PPH8 454 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 A0A1W2PR64 198 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 A0A1W2PRV1 198 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 MEIOCA2RUB1 952 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 A6NIN4 97 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 SNTNA6NMZ2 147 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 VGLL3A8MV65 326 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 H0YAE9 185 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 EI24O14681 340 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 SYNGR1O43759 233 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 GPR137BO60478 399 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 PAHP00439 452 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 SERPINA3P01011 423 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 UBCP0CG48 685 aaKnown RBP5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 PRDX2P32119 198 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 SAA4P35542 130 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 ALDH3A2P51648 485 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 DLX1P56177 255 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 ISL1P61371 349 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 RPL31P62899 125 aaKnown RBP5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 ACTC1P68032 377 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 ACTA1P68133 377 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 ZNF85Q03923 595 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 ACSM1Q08AH1 577 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 KLRD1Q13241 179 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 TP53I3Q53FA7 332 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 SLC25A30Q5SVS4 291 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 MEDAGQ5VYS4 303 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 OLFML2AQ68BL7 652 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 GDPGP1Q6ZNW5 385 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 C17orf107Q6ZR85 190 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 KCTD20Q7Z5Y7 419 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 ANGPTL5Q86XS5 388 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 C10orf67Q8IYJ2 551 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 FAM185AQ8N0U4 392 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 CD177Q8N6Q3 437 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 TRMT10AQ8TBZ6 339 aaKnown RBP5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 TNFRSF14Q92956 283 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 EME1Q96AY2 570 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 MRPL48Q96GC5 212 aaKnown RBP5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 ZNF488Q96MN9 340 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 CHST5Q9GZS9 411 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 HES4Q9HCC6 221 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 C19orf12Q9NSK7 152 aa5.55□□□□□ -1.52
CCDC88A-213ENST00000476903 ZNRD1Q9P1U0 126 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms