RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 I3L1I5 382 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 M0QZ24 198 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF354AO60765 605 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 PVRP15151 417 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 CRABP1P29762 137 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 NUTF2P61970 127 aaKnown RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 ALKBH6Q3KRA9 238 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 BHLHE23Q8NDY6 225 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 OR56B1Q8NGI3 324 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 KCNIP1Q9NZI2 227 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 SGCEO43556 437 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 DNPH1O43598 174 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 IFNA1P01562 189 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 RBP2P50120 134 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 NKX6-1P78426 367 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 RELBQ01201 579 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 TGFBR3Q03167 851 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 OR8B8Q15620 311 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 NRN1LQ496H8 165 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 SLC35D2Q76EJ3 337 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 MRPL21Q7Z2W9 205 aaKnown RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM104Q8NE00 496 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 OR13G1Q8NGZ3 307 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 NANPQ8TBE9 248 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 ST8SIA1Q92185 356 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 RAB39BQ96DA2 213 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 ADGRG7Q96K78 797 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 C18orf12Q96KH6 178 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 C19orf12Q9NSK7 152 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 CPAMD8Q8IZJ3 1885 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 LOC107986453A0A1B0GWG9 222 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM235A6NFC5 223 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 MED6O75586 246 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 SLC9A3R2Q15599 337 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 MEP1BQ16820 701 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 OR52W1Q6IF63 320 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 Q96M66 194 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 URM1Q9BTM9 101 aaKnown RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 ADAMTS9Q9P2N4 1935 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 FRG2CA6NGY1 282 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 G3V3Y1 287 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 MPIG6BO95866 241 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 MAGEB1P43366 347 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM187Q14656 261 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 ELAVL1Q15717 326 aaKnown RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 Q8N7P7 452 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 CCDC71LQ8N9Z2 235 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 OR2I1PQ8NGU4 316 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 SPSB4Q96A44 273 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 C12orf49Q9H741 205 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 KCNJ16Q9NPI9 418 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF705FA8MVS1 300 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 SCAF4O95104 1147 aaKnown RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 MBPP02686 304 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF705DP0CH99 300 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF705BP0CI00 300 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 SRFP11831 508 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 CRYGSP22914 178 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 CD38P28907 300 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 GLIPR1P48060 266 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 AKR1C2P52895 323 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 MRPS21P82921 87 aaKnown RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 RAB32Q13637 225 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 GUK1Q16774 197 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 ZFP82Q8N141 532 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF808Q8N4W9 903 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 MRGPRX1Q96LB2 322 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 UFSP2Q9NUQ7 469 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 FBXL17Q9UF56 701 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 EMC9Q9Y3B6 208 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 CCDC88CQ9P219 2028 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 SAA2-SAA4A0A096LPE2 208 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 OR6C6A6NF89 314 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 ACTL6BO94805 426 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 SERPINF1P36955 418 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 YPEL5P62699 121 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 H3F3AP84243 136 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 SLC22A6Q4U2R8 563 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 PPP1R3BQ86XI6 285 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 DTX1Q86Y01 620 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 FAM219AQ8IW50 185 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 SUMF2Q8NBJ7 301 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 HSD17B11Q8NBQ5 300 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 RAB1CQ92928 201 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 MRGPRX4Q96LA9 322 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 BMFQ96LC9 184 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 NRTNQ99748 197 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 HIST1H2BLQ99880 126 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 TXNDC17Q9BRA2 123 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 PBDC1Q9BVG4 233 aa4.67□□□□□ -1.66
SYNE1-220ENST00000471834 MCTS1Q9ULC4 181 aaKnown RBP4.67□□□□□ -1.66
SYNE1-220ENST00000471834 A0A1W2PPH5 198 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 ANKRD30BLA7E2S9 258 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 GPANK1O95872 356 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 MSR1P21757 451 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 TAS2R60P59551 318 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 LSM6P62312 80 aaKnown RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 GNB1P62873 340 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 HTD2P86397 168 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 CLINT1Q14677 625 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms