RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 PPP3CBP16298 524 aa17.73■□□□□ 0.43
USP39-203ENST00000409470 OPN3Q9H1Y3 402 aaPredicted RBP17.73■□□□□ 0.43
USP39-203ENST00000409470 C12orf4Q9NQ89 552 aa17.73■□□□□ 0.43
USP39-203ENST00000409470 SVILO95425 2214 aa17.73■□□□□ 0.43
USP39-203ENST00000409470 MBD3L4A6NDZ8 208 aaPredicted RBP17.72■□□□□ 0.43
USP39-203ENST00000409470 MBD3L3A6NE82 208 aaPredicted RBP17.72■□□□□ 0.43
USP39-203ENST00000409470 MBD3L5A6NJ08 208 aaPredicted RBP17.72■□□□□ 0.43
USP39-203ENST00000409470 HMSDA8MTL9 139 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 MKRN2OSH3BPM6 223 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 GLRA1P23415 457 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 ECI1P42126 302 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 ERVS71-1P61550 626 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 DAZAP2Q15038 168 aaPredicted RBP17.72■□□□□ 0.43
USP39-203ENST00000409470 SURF2Q15527 256 aaPredicted RBP17.72■□□□□ 0.43
USP39-203ENST00000409470 PLEKHN1Q494U1 663 aaPredicted RBP17.72■□□□□ 0.43
USP39-203ENST00000409470 CXorf67Q86X51 503 aaPredicted RBP17.72■□□□□ 0.43
USP39-203ENST00000409470 WDR31Q8NA23 367 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 OR1J1Q8NGS3 322 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 MBD3L2Q8NHZ7 208 aaPredicted RBP17.72■□□□□ 0.43
USP39-203ENST00000409470 SLC25A40Q8TBP6 338 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 STARD4Q96DR4 205 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 SEC22AQ96IW7 307 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 HS3ST6Q96QI5 342 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 ZNF286AQ9HBT8 521 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 C14orf166Q9Y224 244 aaKnown RBP17.72■□□□□ 0.43
USP39-203ENST00000409470 CACNA1GO43497 2377 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 PRSS44E7EML9 344 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 WDR1O75083 606 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 SFT2D2O95562 160 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 HLA-GP17693 338 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 PMELP40967 661 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 UCP2P55851 309 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 OPCMLQ14982 345 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 SLC9A3R2Q15599 337 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 TMEM211Q6ICI0 200 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 SLC22A25Q6T423 547 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 SEM1Q6ZVN7 128 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 ZNF680Q8NEM1 530 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 CHMP1AQ9HD42 196 aaPredicted RBP17.72■□□□□ 0.43
USP39-203ENST00000409470 COMMD9Q9P000 198 aa17.72■□□□□ 0.43
USP39-203ENST00000409470 RFPL4AA6NLU0 287 aa17.71■□□□□ 0.43
USP39-203ENST00000409470 RFPL4AL1F8VTS6 287 aa17.71■□□□□ 0.43
USP39-203ENST00000409470 MPC2O95563 127 aa17.71■□□□□ 0.43
USP39-203ENST00000409470 PRKACAP17612 351 aa17.71■□□□□ 0.43
USP39-203ENST00000409470 FGL1Q08830 312 aa17.71■□□□□ 0.43
USP39-203ENST00000409470 NHLRC3Q5JS37 347 aa17.71■□□□□ 0.43
USP39-203ENST00000409470 CLEC18BQ6UXF7 455 aa17.71■□□□□ 0.43
USP39-203ENST00000409470 EXTL1Q92935 676 aa17.71■□□□□ 0.43
USP39-203ENST00000409470 MICU1Q9BPX6 476 aa17.71■□□□□ 0.43
USP39-203ENST00000409470 IL36RNQ9UBH0 155 aa17.71■□□□□ 0.43
USP39-203ENST00000409470 GTF3C1Q12789 2109 aa17.71■□□□□ 0.43
USP39-203ENST00000409470 IGKV3-15P01624 115 aa17.71■□□□□ 0.42
USP39-203ENST00000409470 CD8AP01732 235 aa17.71■□□□□ 0.42
USP39-203ENST00000409470 S100A1P23297 94 aa17.71■□□□□ 0.42
USP39-203ENST00000409470 SRSF4Q08170 494 aaKnown RBP17.71■□□□□ 0.42
USP39-203ENST00000409470 IKZF1Q13422 519 aa17.71■□□□□ 0.42
USP39-203ENST00000409470 BOD1Q96IK1 185 aa17.71■□□□□ 0.42
USP39-203ENST00000409470 RTL8AQ9BWD3 113 aa17.71■□□□□ 0.42
USP39-203ENST00000409470 KNG1P01042 644 aa17.7■□□□□ 0.42
USP39-203ENST00000409470 CGAP01215 116 aa17.7■□□□□ 0.42
USP39-203ENST00000409470 RAC2P15153 192 aa17.7■□□□□ 0.42
USP39-203ENST00000409470 CALCRP30988 508 aa17.7■□□□□ 0.42
USP39-203ENST00000409470 MPV17LQ2QL34 196 aa17.7■□□□□ 0.42
USP39-203ENST00000409470 ZNF488Q96MN9 340 aa17.7■□□□□ 0.42
USP39-203ENST00000409470 OR51I2Q9H344 312 aa17.7■□□□□ 0.42
USP39-203ENST00000409470 PLK3Q9H4B4 646 aa17.7■□□□□ 0.42
USP39-203ENST00000409470 TRAV14DV4A0A0A6YYC5 116 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 C5orf51A6NDU8 294 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 IL24Q13007 206 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 P2RY6Q15077 328 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 LRRC37A5PQ49AS3 106 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 C17orf78Q8N4C9 275 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 COQ8AQ8NI60 647 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 PKIBQ9C010 78 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 ZNF71Q9NQZ8 489 aaPredicted RBP17.69■□□□□ 0.42
USP39-203ENST00000409470 C13orf42A0A1B0GVH6 325 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 DBX1A6NMT0 343 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 TPD52L2O43399 206 aaKnown RBP17.69■□□□□ 0.42
USP39-203ENST00000409470 SELEP16581 610 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 DUSP1P28562 367 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 PTGER4P35408 488 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 SUPT4H1P63272 117 aaKnown RBP17.69■□□□□ 0.42
USP39-203ENST00000409470 IGFBP7Q16270 282 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 ZNF660Q6AZW8 331 aaPredicted RBP17.69■□□□□ 0.42
USP39-203ENST00000409470 BEND4Q6ZU67 534 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 BHLHA15Q7RTS1 189 aaPredicted RBP17.69■□□□□ 0.42
USP39-203ENST00000409470 NEK7Q8TDX7 302 aa17.69■□□□□ 0.42
USP39-203ENST00000409470 MARS2Q96GW9 593 aaKnown RBP17.69■□□□□ 0.42
USP39-203ENST00000409470 INTS1Q8N201 2190 aaKnown RBP17.68■□□□□ 0.42
USP39-203ENST00000409470 SPENQ96T58 3664 aaKnown RBP17.68■□□□□ 0.42
USP39-203ENST00000409470 EEF1E1-BLOC1S5C9J1V9 151 aa17.68■□□□□ 0.42
USP39-203ENST00000409470 J3QT63 122 aa17.68■□□□□ 0.42
USP39-203ENST00000409470 IFNA7P01567 189 aa17.68■□□□□ 0.42
USP39-203ENST00000409470 S100A11P31949 105 aa17.68■□□□□ 0.42
USP39-203ENST00000409470 C1orf185Q5T7R7 199 aa17.68■□□□□ 0.42
USP39-203ENST00000409470 DHRS11Q6UWP2 260 aa17.68■□□□□ 0.42
USP39-203ENST00000409470 TMUB2Q71RG4 321 aa17.68■□□□□ 0.42
USP39-203ENST00000409470 ADAT1Q9BUB4 502 aaKnown RBP17.68■□□□□ 0.42
USP39-203ENST00000409470 SCNM1Q9BWG6 230 aa17.68■□□□□ 0.42
USP39-203ENST00000409470 PRR13Q9NZ81 148 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms