RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 IFNA17P01571 189 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 ALDH3B1P43353 468 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 EWSR1Q01844 656 aaKnown RBP eCLIP16.04■□□□□ 0.16
CCDC3-201ENST00000378825 SPSB3Q6PJ21 355 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 SLC22A25Q6T423 547 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 SLC25A45Q8N413 288 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 D2HGDHQ8N465 521 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 SLC35G3Q8N808 338 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 NFAM1Q8NET5 270 aaPredicted RBP16.04■□□□□ 0.16
CCDC3-201ENST00000378825 OR6X1Q8NH79 312 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 C18orf12Q96KH6 178 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 PARPBPQ9NWS1 579 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 GEMIN2O14893 280 aaKnown RBP16.04■□□□□ 0.16
CCDC3-201ENST00000378825 IGLV3-1P01715 115 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 ATP6V0CP27449 155 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 CHATP28329 748 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 GPX4P36969 197 aaPredicted RBP16.04■□□□□ 0.16
CCDC3-201ENST00000378825 RND3P61587 244 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 RUNX1Q01196 453 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 ENDOGQ14249 297 aaKnown RBP16.04■□□□□ 0.16
CCDC3-201ENST00000378825 COMMD1Q8N668 190 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 ZNF385AQ96PM9 386 aaKnown RBP16.04■□□□□ 0.16
CCDC3-201ENST00000378825 NELFAQ9H3P2 528 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 METTL7AQ9H8H3 244 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 IGSF23A1L1A6 192 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 ZNF724A8MTY0 619 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 OR2J2O76002 312 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 TIAF1O95411 115 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 ZNF674Q2M3X9 581 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 UNQ6494/PRO21346Q6UXR6 183 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 LIAT1Q6ZQX7 453 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 HIST2H3AQ71DI3 136 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 OR2G3Q8NGZ4 309 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 NKX2-6A6NCS4 301 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 DUX1O43812 170 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 JMJD7P0C870 316 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 EPHA1P21709 976 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 TAGLN2P37802 199 aaKnown RBP16.03■□□□□ 0.16
CCDC3-201ENST00000378825 GRB2P62993 217 aaKnown RBP16.03■□□□□ 0.16
CCDC3-201ENST00000378825 HIST3H3Q16695 136 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 ANKRD37Q7Z713 158 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 PLXDC1Q8IUK5 500 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 TDHQ8IZJ6 230 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 PBDC1Q9BVG4 233 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 PHF7Q9BWX1 381 aaPredicted RBP16.03■□□□□ 0.16
CCDC3-201ENST00000378825 HSF4Q9ULV5 492 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 V9GYS6 101 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 ST8SIA3O43173 380 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 SUCLG1P53597 346 aaKnown RBP16.03■□□□□ 0.16
CCDC3-201ENST00000378825 FAM189A2Q15884 450 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 P4HA3Q7Z4N8 544 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 KDF1Q8NAX2 398 aaPredicted RBP16.03■□□□□ 0.16
CCDC3-201ENST00000378825 OR10D4PQ8NGN7 298 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 BOD1Q96IK1 185 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 MRGPRX4Q96LA9 322 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 ZNF700Q9H0M5 742 aa16.03■□□□□ 0.16
CCDC3-201ENST00000378825 RBFOX3A6NFN3 312 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 ZNF729A6NN14 1252 aaPredicted RBP16.02■□□□□ 0.16
CCDC3-201ENST00000378825 CST7O76096 145 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 SLC34A2O95436 690 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 RAB5CP51148 216 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 ELOBQ15370 118 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 TMEM217Q8N7C4 229 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 CYB561D1Q8N8Q1 229 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 UCN2Q96RP3 112 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 GPR61Q9BZJ8 451 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 NECAP2Q9NVZ3 263 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 WNT16Q9UBV4 365 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 PISDQ9UG56 409 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 DMRT1Q9Y5R6 373 aa16.02■□□□□ 0.16
CCDC3-201ENST00000378825 DUSP1P28562 367 aa16.02■□□□□ 0.15
CCDC3-201ENST00000378825 ZNF501Q96CX3 271 aaPredicted RBP16.02■□□□□ 0.15
CCDC3-201ENST00000378825 OXGR1Q96P68 337 aa16.02■□□□□ 0.15
CCDC3-201ENST00000378825 RBM24Q9BX46 236 aaKnown RBP16.02■□□□□ 0.15
CCDC3-201ENST00000378825 IGKV1-12A0A0C4DH73 117 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 HSD17B6O14756 317 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 ZNHIT1O43257 154 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 IGKV1D-12P01611 117 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 SOD3P08294 240 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 PATE4P0C8F1 98 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 CDX1P47902 265 aaPredicted RBP16.01■□□□□ 0.15
CCDC3-201ENST00000378825 DLK1P80370 383 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 COL19A1Q14993 1142 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 RSU1Q15404 277 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 PLPP5Q8NEB5 264 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 OR10AD1Q8NGE0 317 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 GALNT14Q96FL9 552 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 PLEK2Q9NYT0 353 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 TNRC18O15417 2968 aaPredicted RBP16.01■□□□□ 0.15
CCDC3-201ENST00000378825 CXorf65A6NEN9 183 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 M0R135 149 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 HIST1H2BKO60814 126 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 HIST1H2BJP06899 126 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 HEXBP07686 556 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 HIST1H2BOP23527 126 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 HIST1H2BBP33778 126 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 HIST1H2BDP58876 126 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 HIST1H2BCP62807 126 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 HIST2H2BEQ16778 126 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 CXorf66Q5JRM2 361 aaPredicted RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms