RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 SH2D2AQ9NP31 389 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 TMED3Q9Y3Q3 217 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 A0A1W2PNV4 684 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 VWA1Q6PCB0 445 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 KLHDC1Q8N7A1 406 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 IGHV5-10-1A0A0J9YXX1 117 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 A0A1B0GTL3 188 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 CT62P0C5K7 136 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 FGF8P55075 233 aaPredicted RBP11.73□□□□□ -0.53
COL1A1-201ENST00000225964 HTRA4P83105 476 aaPredicted RBP11.73□□□□□ -0.53
COL1A1-201ENST00000225964 MOGAT2Q3SYC2 334 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 THSD4Q6ZMP0 1018 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 SIRT3Q9NTG7 399 aaPredicted RBP11.73□□□□□ -0.53
COL1A1-201ENST00000225964 FDX2Q6P4F2 183 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 ARRDC1Q8N5I2 433 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 RAB40CQ96S21 281 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 GSX2Q9BZM3 304 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 ZNF665Q9H7R5 613 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 SLC7A10Q9NS82 523 aa11.73□□□□□ -0.53
COL1A1-201ENST00000225964 PGA3P0DJD8 388 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 TIAL1Q01085 375 aaKnown RBP eCLIP11.72□□□□□ -0.53
COL1A1-201ENST00000225964 OR5C1Q8NGR4 320 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 VAMP8Q9BV40 100 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 KIAA1324LA8MWY0 1029 aaPredicted RBP11.72□□□□□ -0.53
COL1A1-201ENST00000225964 PATE3B3GLJ2 98 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 C21orf140B9A014 251 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 OR5AC1P0C628 307 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 CD40P25942 277 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 PAFAH1B2P68402 229 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 WDR74Q6RFH5 385 aaPredicted RBP11.72□□□□□ -0.53
COL1A1-201ENST00000225964 DOLPP1Q86YN1 238 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 ZDHHC22Q8N966 263 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 C5orf17Q8NAS9 161 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 PTP4A1Q93096 173 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 R3HDM4Q96D70 268 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 RNF7Q9UBF6 113 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 OR5B21A6NL26 309 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 PNPP00491 289 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 PTHLHP12272 177 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 HNRNPA3P51991 378 aaKnown RBP11.72□□□□□ -0.53
COL1A1-201ENST00000225964 CNTD2Q9H8S5 307 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 RASL12Q9NYN1 266 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 C1RLQ9NZP8 487 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 NTMQ9P121 344 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 SCN7AQ01118 1682 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 A0A1B0GTH9 108 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 ADAM11O75078 769 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 YBX1P67809 324 aaKnown RBP11.72□□□□□ -0.53
COL1A1-201ENST00000225964 RHBDD2Q6NTF9 364 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 OR10A7Q8NGE5 316 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 OR8B12Q8NGG6 310 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 NXF2Q9GZY0 626 aaKnown RBP11.72□□□□□ -0.53
COL1A1-201ENST00000225964 NAA60Q9H7X0 242 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 LIPGQ9Y5X9 500 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 MED19A0JLT2 244 aaPredicted RBP11.72□□□□□ -0.53
COL1A1-201ENST00000225964 SFT2D2O95562 160 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 CD82P27701 267 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 PSMB2P49721 201 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 C21orf58P58505 322 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 ETFDHQ16134 617 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 HIKESHIQ53FT3 197 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 C12orf73Q69YU5 71 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 TMEM88Q6PEY1 159 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 TMEM116Q8NCL8 245 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 INSIG2Q9Y5U4 225 aa11.72□□□□□ -0.53
COL1A1-201ENST00000225964 OR2Y1Q8NGV0 311 aa11.71□□□□□ -0.53
COL1A1-201ENST00000225964 RHNO1Q9BSD3 238 aa11.71□□□□□ -0.53
COL1A1-201ENST00000225964 PDCD6O75340 191 aa11.71□□□□□ -0.53
COL1A1-201ENST00000225964 RNFT1Q5M7Z0 435 aa11.71□□□□□ -0.53
COL1A1-201ENST00000225964 DHRS11Q6UWP2 260 aa11.71□□□□□ -0.53
COL1A1-201ENST00000225964 HEXA-AS1Q9H8Q6 139 aa11.71□□□□□ -0.53
COL1A1-201ENST00000225964 KCNE1BA0A087WTH5 132 aa11.71□□□□□ -0.53
COL1A1-201ENST00000225964 ZNF707Q96C28 371 aaPredicted RBP11.71□□□□□ -0.53
COL1A1-201ENST00000225964 MPC1Q9Y5U8 109 aa11.71□□□□□ -0.53
COL1A1-201ENST00000225964 CXorf51AA0A1B0GTR3 108 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 FAM24AA6NFZ4 105 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 PTBP3O95758 552 aaKnown RBP11.71□□□□□ -0.54
COL1A1-201ENST00000225964 PRF1P14222 555 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 CTGFP29279 349 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 CDKN2AP42771 156 aaKnown RBP11.71□□□□□ -0.54
COL1A1-201ENST00000225964 SPCS3P61009 180 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 SLC25A40Q8TBP6 338 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 SMIM4Q8WVI0 70 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 FLYWCH2Q96CP2 140 aaKnown RBP11.71□□□□□ -0.54
COL1A1-201ENST00000225964 WASHC3Q9Y3C0 194 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 TTC3P53804 2025 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 HLXQ14774 488 aaPredicted RBP11.71□□□□□ -0.54
COL1A1-201ENST00000225964 OR10G4Q8NGN3 311 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 OR10G9Q8NGN4 311 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 OR10G7Q8NGN6 311 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 ADTRPQ96IZ2 230 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 RASL10BQ96S79 203 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 A0A1B0GTQ1 180 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 G6PCP35575 357 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 HIST1H3AP68431 136 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 FAM60AQ9NP50 221 aa11.71□□□□□ -0.54
COL1A1-201ENST00000225964 CD96P40200 585 aa11.7□□□□□ -0.54
COL1A1-201ENST00000225964 FAHD2BQ6P2I3 314 aaPredicted RBP11.7□□□□□ -0.54
COL1A1-201ENST00000225964 TBC1D26Q86UD7 250 aa11.7□□□□□ -0.54
COL1A1-201ENST00000225964 ASB13Q8WXK3 278 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms