RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 MEGF9Q9H1U4 602 aa8.8□□□□□ -1
VPS39-208ENST00000564994 PPA2Q9H2U2 334 aa8.8□□□□□ -1
VPS39-208ENST00000564994 IMPAD1Q9NX62 359 aa8.8□□□□□ -1
VPS39-208ENST00000564994 FRRS1LQ9P0K9 344 aa8.8□□□□□ -1
VPS39-208ENST00000564994 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.8□□□□□ -1
VPS39-208ENST00000564994 TMEM82A0PJX8 343 aa8.79□□□□□ -1
VPS39-208ENST00000564994 C17orf98A8MV24 154 aa8.79□□□□□ -1
VPS39-208ENST00000564994 GABRB1P18505 474 aa8.79□□□□□ -1
VPS39-208ENST00000564994 COX7A1P24310 79 aa8.79□□□□□ -1
VPS39-208ENST00000564994 TGFBR2P37173 567 aa8.79□□□□□ -1
VPS39-208ENST00000564994 NPBWR2P48146 333 aa8.79□□□□□ -1
VPS39-208ENST00000564994 ALDH3A2P51648 485 aa8.79□□□□□ -1
VPS39-208ENST00000564994 OR12D2P58182 307 aa8.79□□□□□ -1
VPS39-208ENST00000564994 LY6EQ16553 131 aa8.79□□□□□ -1
VPS39-208ENST00000564994 OCLNQ16625 522 aa8.79□□□□□ -1
VPS39-208ENST00000564994 ASPHD2Q6ICH7 369 aa8.79□□□□□ -1
VPS39-208ENST00000564994 SLC35E4Q6ICL7 350 aa8.79□□□□□ -1
VPS39-208ENST00000564994 FDX2Q6P4F2 183 aa8.79□□□□□ -1
VPS39-208ENST00000564994 CRIP3Q6Q6R5 217 aa8.79□□□□□ -1
VPS39-208ENST00000564994 ZNF782Q6ZMW2 699 aaPredicted RBP8.79□□□□□ -1
VPS39-208ENST00000564994 TCF23Q7RTU1 214 aa8.79□□□□□ -1
VPS39-208ENST00000564994 RNF144BQ7Z419 303 aa8.79□□□□□ -1
VPS39-208ENST00000564994 FAM220AQ7Z4H9 259 aa8.79□□□□□ -1
VPS39-208ENST00000564994 CBR4Q8N4T8 237 aa8.79□□□□□ -1
VPS39-208ENST00000564994 ASCC1Q8N9N2 400 aaKnown RBP8.79□□□□□ -1
VPS39-208ENST00000564994 OR10AC1Q8NH08 325 aa8.79□□□□□ -1
VPS39-208ENST00000564994 PIFOQ8TCI5 191 aa8.79□□□□□ -1
VPS39-208ENST00000564994 FGGYQ96C11 551 aa8.79□□□□□ -1
VPS39-208ENST00000564994 C10orf35Q96D05 121 aa8.79□□□□□ -1
VPS39-208ENST00000564994 BORCS8Q96FH0 119 aa8.79□□□□□ -1
VPS39-208ENST00000564994 HEXA-AS1Q9H8Q6 139 aa8.79□□□□□ -1
VPS39-208ENST00000564994 TET2Q6N021 2002 aaPredicted RBP8.78□□□□□ -1
VPS39-208ENST00000564994 A0A1W2PPH5 198 aa8.78□□□□□ -1
VPS39-208ENST00000564994 DAPL1A0PJW8 107 aa8.78□□□□□ -1
VPS39-208ENST00000564994 SLC16A6O15403 523 aa8.78□□□□□ -1
VPS39-208ENST00000564994 SERPINA3P01011 423 aa8.78□□□□□ -1
VPS39-208ENST00000564994 IGHA1P01876 353 aa8.78□□□□□ -1
VPS39-208ENST00000564994 ISG15P05161 165 aa8.78□□□□□ -1
VPS39-208ENST00000564994 CHRM2P08172 466 aa8.78□□□□□ -1
VPS39-208ENST00000564994 CALCBP10092 127 aa8.78□□□□□ -1
VPS39-208ENST00000564994 BCL3P20749 454 aa8.78□□□□□ -1
VPS39-208ENST00000564994 RBP2P50120 134 aa8.78□□□□□ -1
VPS39-208ENST00000564994 ACTC1P68032 377 aa8.78□□□□□ -1
VPS39-208ENST00000564994 ACTA1P68133 377 aa8.78□□□□□ -1
VPS39-208ENST00000564994 CNN3Q15417 329 aaKnown RBP8.78□□□□□ -1
VPS39-208ENST00000564994 LRRC75BQ2VPJ9 315 aa8.78□□□□□ -1
VPS39-208ENST00000564994 LDLRAD2Q5SZI1 272 aa8.78□□□□□ -1
VPS39-208ENST00000564994 TMEM244Q5VVB8 128 aa8.78□□□□□ -1
VPS39-208ENST00000564994 MEDAGQ5VYS4 303 aa8.78□□□□□ -1
VPS39-208ENST00000564994 ZFP1Q6P2D0 407 aa8.78□□□□□ -1
VPS39-208ENST00000564994 LHFPL4Q7Z7J7 247 aa8.78□□□□□ -1
VPS39-208ENST00000564994 EGFL6Q8IUX8 553 aa8.78□□□□□ -1
VPS39-208ENST00000564994 OR8H2Q8N162 312 aa8.78□□□□□ -1
VPS39-208ENST00000564994 DYNAPQ8N1N2 210 aa8.78□□□□□ -1
VPS39-208ENST00000564994 DNAAF1Q8NEP3 725 aa8.78□□□□□ -1
VPS39-208ENST00000564994 OR52N4Q8NGI2 321 aa8.78□□□□□ -1
VPS39-208ENST00000564994 OR51A4Q8NGJ6 313 aa8.78□□□□□ -1
VPS39-208ENST00000564994 PP6455Q8WZ26 134 aa8.78□□□□□ -1
VPS39-208ENST00000564994 EMG1Q92979 244 aaKnown RBP8.78□□□□□ -1
VPS39-208ENST00000564994 LGALS12Q96DT0 336 aa8.78□□□□□ -1
VPS39-208ENST00000564994 PELI1Q96FA3 418 aa8.78□□□□□ -1
VPS39-208ENST00000564994 SLC29A1Q99808 456 aa8.78□□□□□ -1
VPS39-208ENST00000564994 RBFOX1Q9NWB1 397 aaKnown RBP8.78□□□□□ -1
VPS39-208ENST00000564994 EXOGQ9Y2C4 368 aaKnown RBP8.78□□□□□ -1
VPS39-208ENST00000564994 SIGLEC9Q9Y336 463 aa8.78□□□□□ -1
VPS39-208ENST00000564994 IGKV1-12A0A0C4DH73 117 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 hCG_1809904A0A1W2PP81 198 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 A0A1W2PPE2 198 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 A0A1W2PR64 198 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 A0A1W2PRV1 198 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 FAM90A8PA6NJQ4 464 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 OR4C45A6NMZ5 311 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 J3QLW9 94 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 CHST1O43916 411 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 PSPNO60542 156 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 HAND1O96004 215 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 IGKV1D-12P01611 117 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 HTR1AP08908 422 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 ZNF728P0DKX0 622 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 ZNF19P17023 458 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 ATF1P18846 271 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 AZGP1P25311 298 aaKnown RBP8.77□□□□□ -1.01
VPS39-208ENST00000564994 DUSP1P28562 367 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 POU3F4P49335 361 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 ATP1B3P54709 279 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 MTCP1P56278 107 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 EDDM3BP56851 147 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 ZNF91Q05481 1191 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 AANATQ16613 207 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 UTS2BQ765I0 119 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 GDPD3Q7L5L3 318 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 KCTD20Q7Z5Y7 419 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 ENTHD1Q8IYW4 607 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 ACBD7Q8N6N7 88 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 TPRX1Q8N7U7 411 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 RFT1Q96AA3 541 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 C4orf36Q96KX1 117 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 SNX22Q96L94 193 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 ZNF649Q9BS31 505 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 CHST6Q9GZX3 395 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms