RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 PCDHB10Q9UN67 800 aa24.75■■□□□ 1.55
LIMCH1-211ENST00000509638 ING4Q9UNL4 249 aa24.75■■□□□ 1.55
LIMCH1-211ENST00000509638 YLPM1P49750 1951 aaKnown RBP24.74■■□□□ 1.55
LIMCH1-211ENST00000509638 IGHV2-5P01817 119 aa24.74■■□□□ 1.55
LIMCH1-211ENST00000509638 RPS2P15880 293 aaKnown RBP24.74■■□□□ 1.55
LIMCH1-211ENST00000509638 PRKACAP17612 351 aa24.74■■□□□ 1.55
LIMCH1-211ENST00000509638 SDC2P34741 201 aa24.74■■□□□ 1.55
LIMCH1-211ENST00000509638 C1orf100Q5SVJ3 147 aa24.74■■□□□ 1.55
LIMCH1-211ENST00000509638 GLIPR1L1Q6UWM5 242 aa24.74■■□□□ 1.55
LIMCH1-211ENST00000509638 ASCL4Q6XD76 172 aa24.74■■□□□ 1.55
LIMCH1-211ENST00000509638 ZNF665Q9H7R5 613 aa24.74■■□□□ 1.55
LIMCH1-211ENST00000509638 V9GY05 133 aa24.74■■□□□ 1.55
LIMCH1-211ENST00000509638 GABARAPO95166 117 aa24.73■■□□□ 1.55
LIMCH1-211ENST00000509638 TFF1P04155 84 aa24.73■■□□□ 1.55
LIMCH1-211ENST00000509638 SLC22A6Q4U2R8 563 aa24.73■■□□□ 1.55
LIMCH1-211ENST00000509638 LYPD2Q6UXB3 125 aa24.73■■□□□ 1.55
LIMCH1-211ENST00000509638 NR2C2APQ86WQ0 139 aa24.73■■□□□ 1.55
LIMCH1-211ENST00000509638 ANKRD13BQ86YJ7 626 aa24.73■■□□□ 1.55
LIMCH1-211ENST00000509638 OR6M1Q8NGM8 313 aa24.73■■□□□ 1.55
LIMCH1-211ENST00000509638 METTL9Q9H1A3 318 aa24.73■■□□□ 1.55
LIMCH1-211ENST00000509638 RHOFQ9HBH0 211 aa24.73■■□□□ 1.55
LIMCH1-211ENST00000509638 HMG20AQ9NP66 347 aa24.73■■□□□ 1.55
LIMCH1-211ENST00000509638 IL36GQ9NZH8 169 aa24.73■■□□□ 1.55
LIMCH1-211ENST00000509638 IGKV1D-17A0A075B6S4 117 aa24.72■■□□□ 1.55
LIMCH1-211ENST00000509638 SMAD7O15105 426 aaKnown RBP24.72■■□□□ 1.55
LIMCH1-211ENST00000509638 SLC22A1O15245 554 aa24.72■■□□□ 1.55
LIMCH1-211ENST00000509638 CD37P11049 281 aa24.72■■□□□ 1.55
LIMCH1-211ENST00000509638 PSG2P11465 335 aa24.72■■□□□ 1.55
LIMCH1-211ENST00000509638 HTR2CP28335 458 aa24.72■■□□□ 1.55
LIMCH1-211ENST00000509638 SNU13P55769 128 aaKnown RBP24.72■■□□□ 1.55
LIMCH1-211ENST00000509638 LMO4P61968 165 aa24.72■■□□□ 1.55
LIMCH1-211ENST00000509638 ANGPTL6Q8NI99 470 aa24.72■■□□□ 1.55
LIMCH1-211ENST00000509638 TBC1D15Q8TC07 691 aa24.72■■□□□ 1.55
LIMCH1-211ENST00000509638 RAB39BQ96DA2 213 aa24.72■■□□□ 1.55
LIMCH1-211ENST00000509638 COX4I2Q96KJ9 171 aa24.72■■□□□ 1.55
LIMCH1-211ENST00000509638 SLC17A2O00624 439 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 KNG1P01042 644 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 SERPINA2P20848 420 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 PSMD7P51665 324 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 MXD1Q05195 221 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 FIP1L1Q6UN15 594 aaKnown RBP24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 TPRA1Q86W33 373 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 C1orf147Q96MC9 270 aaPredicted RBP24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 PATZ1Q9HBE1 687 aaKnown RBP24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 OR14J1Q9UGF5 321 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 ZNF222Q9UK12 451 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 NKX6-3A6NJ46 265 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 RFPL4AA6NLU0 287 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 RFPL4AL1F8VTS6 287 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 TMPRSS2O15393 492 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 ADAM20O43506 726 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 NDUFA2O43678 99 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 HEXAP06865 529 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 CEBPDP49716 269 aaPredicted RBP24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 FGF12P61328 243 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 NCS1P62166 190 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 CCL13Q99616 98 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 CTSZQ9UBR2 303 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 MIOXQ9UGB7 285 aa24.71■■□□□ 1.55
LIMCH1-211ENST00000509638 DOCK11Q5JSL3 2073 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 A0A1B0GW55 424 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 F5H0A9 414 aaPredicted RBP24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 TNFRSF13BO14836 293 aaPredicted RBP24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 HTR3BO95264 441 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 DUX4L2P0CJ85 424 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 DUX4L3P0CJ86 424 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 DUX4L4P0CJ87 422 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 DUX4L5P0CJ88 424 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 DUX4L6P0CJ89 424 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 DUX4L7P0CJ90 424 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 VBP1P61758 197 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 RAB11BQ15907 218 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 DGUOKQ16854 277 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 ELP2Q6IA86 826 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 FAM166AQ6J272 317 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 DUX4L9Q6RFH8 374 aaPredicted RBP24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 NLRC3Q7RTR2 1065 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 FAM216BQ8N7L0 139 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 DUX4Q9UBX2 424 aa24.7■■□□□ 1.54
LIMCH1-211ENST00000509638 A0A0G2JK05 382 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 A0A1W2PP11 408 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 ZNF780AO75290 641 aaPredicted RBP24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 CSTBP04080 98 aaKnown RBP24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 CLEC2LP0C7M8 214 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 AMY2BP19961 511 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 GABRA2P47869 451 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 BMXP51813 675 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 SEC61A1P61619 476 aaKnown RBP24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 P2RY14Q15391 338 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 CTF1Q16619 201 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 SPIN3Q5JUX0 258 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 HES5Q5TA89 166 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 CLVS1Q8IUQ0 354 aaPredicted RBP24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 OR8B3Q8NGG8 313 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 GAFA1Q96PS6 74 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 OR8B2Q96RD0 313 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 DNTTIP1Q9H147 329 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 TLN2Q9Y4G6 2542 aa24.69■■□□□ 1.54
LIMCH1-211ENST00000509638 IFITM5A6NNB3 132 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms