RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 PCF11O94913 1555 aaKnown RBP3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 BICRAQ9NZM4 1560 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 IGHV3-74A0A0B4J1X5 117 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 IGHV3OR16-9A0A0B4J2B5 98 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 TMEM213A2RRL7 107 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 C9orf170A2RU37 121 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 NKX2-6A6NCS4 301 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 METTL15A6NJ78 407 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 KLLNB2CW77 178 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 M0QZK8 103 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 KPNA3O00505 521 aaPredicted RBP3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 AZIN1O14977 448 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 MAGEB4O15481 346 aaPredicted RBP3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 CD5LO43866 347 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 KLRC4O43908 158 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 ZNF861PO60384 105 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 SLC16A7O60669 478 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 TRAPPC6AO75865 159 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 TNFAIP8O95379 198 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 FADS2O95864 444 aaKnown RBP3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 SMIM6P0DI80 62 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 IFI30P13284 250 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 ZNF19P17023 458 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 IGFBP3P17936 291 aaPredicted RBP3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 ELK1P19419 428 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 RAB3AP20336 220 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 OGNP20774 298 aaKnown RBP3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 CCR7P32248 378 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 RPL35P42766 123 aaKnown RBP3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 MAP2K4P45985 399 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 CYB561P49447 251 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 LHX2P50458 406 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 CCR6P51684 374 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 XKP51811 444 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 ZNF136P52737 540 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 SLC35B1P78383 322 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 DEFA6Q01524 100 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 RPL18AQ02543 176 aaKnown RBP3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 SKP2Q13309 424 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 TPBGQ13641 420 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 APOFQ13790 326 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 TMED2Q15363 201 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 KLHL12Q53G59 568 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 ACSBG2Q5FVE4 666 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 PLET1Q6UQ28 207 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 TMEM144Q7Z5S9 345 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 CRLF3Q8IUI8 442 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 WDFY1Q8IWB7 410 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 PGAM4Q8N0Y7 254 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 DAW1Q8N136 415 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 OR8J3Q8NGG0 315 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 RCN3Q96D15 328 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 WDR34Q96EX3 536 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 PHYHIPLQ96FC7 376 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 FOPNLQ96NB1 174 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 PFDN5Q99471 154 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 CHAC1Q9BUX1 264 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 SYT4Q9H2B2 425 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 WFDC1Q9HC57 220 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 ZNF257Q9Y2Q1 563 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 ARL2BPQ9Y2Y0 163 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 POLR3HQ9Y535 204 aaPredicted RBP3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 OR51B2Q9Y5P1 312 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 V9GYY9 64 aa3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 BRCA1P38398 1863 aaKnown RBP3.3□□□□□ -1.88
HMGB1P13-201ENST00000406019 SCAPERQ9BY12 1400 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 CARMIL3Q8ND23 1372 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 MTCL1Q9Y4B5 1905 aaKnown RBP3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 A0A0A6YYD5 115 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 TMEM150BA6NC51 233 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 FAM166BA8MTA8 275 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 C9J4A7 227 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 PANO1I0J062 215 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 M0QYV0 167 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 CXCR6O00574 342 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 PRMT5O14744 637 aaPredicted RBP3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 SLC22A1O15245 554 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 TGOLN2O43493 480 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 SGCEO43556 437 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 RDH16O75452 317 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 CTSLP07711 333 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 HTR1AP08908 422 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 CD37P11049 281 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 PHBP35232 272 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 ARR3P36575 388 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 MYCNOSP40205 109 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 P2RX1P51575 399 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 WNT4P56705 351 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 RPS23P62266 143 aaKnown RBP3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 ESRRGP62508 458 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 PAFAH1B2P68402 229 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 ZNF266Q14584 549 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 ZNF658BQ4V348 819 aaPredicted RBP3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 SYT6Q5T7P8 510 aaPredicted RBP3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 SAXO2Q658L1 398 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 SCIMPQ6UWF3 145 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 Q8N402 240 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 NECAP1Q8NC96 275 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 PXT1Q8NFP0 134 aa3.29□□□□□ -1.88
HMGB1P13-201ENST00000406019 OR13D1Q8NGV5 346 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms