RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 ZNF75AQ96N20 296 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 SMIM3Q9BZL3 60 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 TUBG2Q9NRH3 451 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 TMEM106BQ9NUM4 274 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 DCAF13Q9NV06 445 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 TMEM38BQ9NVV0 291 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 BEX4Q9NWD9 120 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 PURGQ9UJV8 347 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 LY75O60449 1722 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 CT62P0C5K7 136 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 RELAQ04206 551 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 SRSF6Q13247 344 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 ZFP62Q8NB50 900 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 TMEM174Q8WUU8 243 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 PP6455Q8WZ26 134 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 VGLL1Q99990 258 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 TMEM38AQ9H6F2 299 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 RFPL4AA6NLU0 287 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 RFPL4AL1F8VTS6 287 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 SIAH2O43255 324 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 TRGV3P03979 118 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 OPCMLQ14982 345 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 GABRA6Q16445 453 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 OR8U1Q8NH10 309 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 ZNF420Q8TAQ5 688 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 SPSB1Q96BD6 273 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 ABCG5Q9H222 651 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 ARV1Q9H2C2 271 aa8.06□□□□□ -1.12
LIMCH1-202ENST00000381753 HPNP05981 417 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 RPS27P42677 84 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 PRR30Q53SZ7 412 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 KDF1Q8NAX2 398 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 MFFQ9GZY8 342 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 UBQLN3Q9H347 655 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 GASTP01350 101 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 GZMHP20718 246 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 PRDX2P32119 198 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 TMEM33P57088 247 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 YBX1P67809 324 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 EIF4EBP2Q13542 120 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 TOMM34Q15785 309 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 C3orf36Q3SXR2 165 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 Q6ZT83 130 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 ASB1Q9Y576 335 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 ZNF705FA8MVS1 300 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 CHEK1O14757 476 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 ADAM11O75078 769 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 ZNF705DP0CH99 300 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 ZNF705BP0CI00 300 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 KIR3DL2P43630 455 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 UQCRFS1P47985 274 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 CYHR1Q6ZMK1 362 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 ZNF767PQ75MW2 155 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 HARBI1Q96MB7 349 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 CLEC7AQ9BXN2 247 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 CEPT1Q9Y6K0 416 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 BOLA2-SMG1P6H3BVE0 249 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 RRASP10301 218 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 CHATP28329 748 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 COL10A1Q03692 680 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 OR8I2Q8N0Y5 310 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 TMEM217Q8N7C4 229 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 LILRB4Q8NHJ6 448 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 TTC3P53804 2025 aa8.05□□□□□ -1.12
LIMCH1-202ENST00000381753 A0A0G2JLM5 398 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 OOEPA6NGQ2 149 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 PLPP3O14495 311 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 OR2J3O76001 311 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 HLA-DOBP13765 273 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 GABARAPL2P60520 117 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 DBX2Q6ZNG2 339 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 GIMAP1Q8WWP7 306 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 SIGLEC11Q96RL6 698 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 MCRIP2Q9BUT9 160 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 SAMD10Q9BYL1 202 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 OR2D2Q9H210 308 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 SLC17A5Q9NRA2 495 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 METTL1Q9UBP6 276 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 ZNF724A8MTY0 619 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 TMEM262E9PQX1 116 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 ZFP36L1Q07352 338 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 CR1LQ2VPA4 569 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 SPSB2Q99619 263 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 EXOSC3Q9NQT5 275 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 PIPOXQ9P0Z9 390 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 FOXJ3Q9UPW0 622 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 SPTBN2O15020 2390 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 CHST1O43916 411 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 SNRPD3P62318 126 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 METAP1DQ6UB28 335 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 SKA3Q8IX90 412 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 C17orf47Q8NEP4 570 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 ZNF703Q9H7S9 590 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 ACOXLQ9NUZ1 547 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 ING1Q9UK53 422 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 GOLT1BQ9Y3E0 138 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 IGKV3D-15A0A087WSY6 115 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 A0A1W2PS29 197 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 K7N7A8 449 aa8.04□□□□□ -1.12
LIMCH1-202ENST00000381753 ST8SIA3O43173 380 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms