RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TAS2R31P59538 309 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 ARL6IP1Q15041 203 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 FAM209AQ5JX71 171 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 LPCAT3Q6P1A2 487 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 LHFPL1Q86WI0 220 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 OSR2Q8N2R0 312 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 GSX2Q9BZM3 304 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 OSGIN2Q9Y236 505 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 ST3GAL6Q9Y274 331 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 TNRC6AQ8NDV7 1962 aaKnown RBP14.1□□□□□ -0.15
COL4A1-204ENST00000543140 RIF1Q5UIP0 2472 aaKnown RBP14.1□□□□□ -0.15
COL4A1-204ENST00000543140 WT1P19544 449 aaPredicted RBP14.1□□□□□ -0.15
COL4A1-204ENST00000543140 TNFSF10P50591 281 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 ARPC4P59998 168 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 CLLU1Q5K131 121 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 GSG1LQ6UXU4 331 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 ASCL4Q6XD76 172 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 SLC25A26Q70HW3 274 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 ZNF611Q8N823 705 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 TMEM178AQ8NBL3 297 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 BHLHE23Q8NDY6 225 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 OR10AD1Q8NGE0 317 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 RNF122Q9H9V4 155 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 STARD10Q9Y365 291 aa14.1□□□□□ -0.15
COL4A1-204ENST00000543140 SLC22A20A6NK97 555 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 POM121CA8CG34 1229 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 RPA2P15927 270 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 SPINK2P20155 84 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 FPR2P25090 351 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 NPBWR2P48146 333 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 ESCO2Q56NI9 601 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 BEX5Q5H9J7 111 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 CLEC18BQ6UXF7 455 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 MRPL21Q7Z2W9 205 aaKnown RBP14.09□□□□□ -0.15
COL4A1-204ENST00000543140 FDCSPQ8NFU4 85 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 C17orf50Q8WW18 174 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 CMSS1Q9BQ75 279 aaKnown RBP14.09□□□□□ -0.15
COL4A1-204ENST00000543140 REPIN1Q9BWE0 567 aaKnown RBP14.09□□□□□ -0.15
COL4A1-204ENST00000543140 ASCL3Q9NQ33 180 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 CEACAM18A8MTB9 384 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 KCNAB3O43448 404 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 KNG1P01042 644 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 CHATP28329 748 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 SERPINF1P36955 418 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 SUPT4H1P63272 117 aaKnown RBP14.09□□□□□ -0.15
COL4A1-204ENST00000543140 SRSF4Q08170 494 aaKnown RBP14.09□□□□□ -0.15
COL4A1-204ENST00000543140 FGL1Q08830 312 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 NHLRC3Q5JS37 347 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 TMEM185AQ8NFB2 350 aa14.09□□□□□ -0.15
COL4A1-204ENST00000543140 SNAPC5O75971 98 aa14.08□□□□□ -0.15
COL4A1-204ENST00000543140 WISP2O76076 250 aa14.08□□□□□ -0.15
COL4A1-204ENST00000543140 SPDEFO95238 335 aa14.08□□□□□ -0.15
COL4A1-204ENST00000543140 HLA-GP17693 338 aa14.08□□□□□ -0.15
COL4A1-204ENST00000543140 AGTR1P30556 359 aa14.08□□□□□ -0.15
COL4A1-204ENST00000543140 PRDX4Q13162 271 aa14.08□□□□□ -0.15
COL4A1-204ENST00000543140 RTL6Q6ICC9 239 aa14.08□□□□□ -0.15
COL4A1-204ENST00000543140 C11orf87Q6NUJ2 197 aa14.08□□□□□ -0.15
COL4A1-204ENST00000543140 PEG10Q86TG7 708 aaKnown RBP14.08□□□□□ -0.15
COL4A1-204ENST00000543140 COQ8AQ8NI60 647 aa14.08□□□□□ -0.15
COL4A1-204ENST00000543140 ZNF2Q9BSG1 426 aaPredicted RBP14.08□□□□□ -0.15
COL4A1-204ENST00000543140 ATPIF1Q9UII2 106 aa14.08□□□□□ -0.15
COL4A1-204ENST00000543140 DBX1A6NMT0 343 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 CA11O75493 328 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 ADAP1O75689 374 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 IL18BPO95998 194 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 PGAM2P15259 253 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 CD82P27701 267 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 ARR3P36575 388 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 GPM6AP51674 278 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 MALLQ13021 153 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 PPA1Q15181 289 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 COMMD7Q86VX2 200 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 APOBEC3DQ96AK3 386 aaPredicted RBP14.08□□□□□ -0.16
COL4A1-204ENST00000543140 POM121L2Q96KW2 1035 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 ANXA10Q9UJ72 324 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 HSF4Q9ULV5 492 aa14.08□□□□□ -0.16
COL4A1-204ENST00000543140 SFT2D2O95562 160 aa14.07□□□□□ -0.16
COL4A1-204ENST00000543140 SOX8P57073 446 aa14.07□□□□□ -0.16
COL4A1-204ENST00000543140 PLP2Q04941 152 aa14.07□□□□□ -0.16
COL4A1-204ENST00000543140 IKZF1Q13422 519 aa14.07□□□□□ -0.16
COL4A1-204ENST00000543140 ANKRD55Q3KP44 614 aa14.07□□□□□ -0.16
COL4A1-204ENST00000543140 PXT1Q8NFP0 134 aa14.07□□□□□ -0.16
COL4A1-204ENST00000543140 SCGB3A2Q96PL1 93 aa14.07□□□□□ -0.16
COL4A1-204ENST00000543140 FGF23Q9GZV9 251 aaPredicted RBP14.07□□□□□ -0.16
COL4A1-204ENST00000543140 ZDHHC11Q9H8X9 412 aa14.07□□□□□ -0.16
COL4A1-204ENST00000543140 SVILO95425 2214 aa14.07□□□□□ -0.16
COL4A1-204ENST00000543140 ZNF292O60281 2723 aa14.07□□□□□ -0.16
COL4A1-204ENST00000543140 CLN3Q13286 438 aa14.07□□□□□ -0.16
COL4A1-204ENST00000543140 RFPL4BQ6ZWI9 263 aa14.07□□□□□ -0.16
COL4A1-204ENST00000543140 ESPL1Q14674 2120 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 ZFHX2Q9C0A1 2572 aaPredicted RBP14.06□□□□□ -0.16
COL4A1-204ENST00000543140 MPTX1A8MV57 137 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 OR7C1O76099 320 aaPredicted RBP14.06□□□□□ -0.16
COL4A1-204ENST00000543140 FCGR3AP08637 254 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 MPGP29372 298 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 HAAOP46952 286 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 P2RX3P56373 397 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 STK11Q15831 433 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 FBXW9Q5XUX1 488 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 FAM219AQ8IW50 185 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 131.3 ms