RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 CPNE2Q96FN4 548 aaPredicted RBP11.53□□□□□ -0.56
CD44-224ENST00000526669 PLGRKTQ9HBL7 147 aa11.53□□□□□ -0.56
CD44-224ENST00000526669 SMURF1Q9HCE7 757 aa11.53□□□□□ -0.56
CD44-224ENST00000526669 MTCH1Q9NZJ7 389 aa11.53□□□□□ -0.56
CD44-224ENST00000526669 MRPS28Q9Y2Q9 187 aaKnown RBP11.53□□□□□ -0.56
CD44-224ENST00000526669 SRRM5B3KS81 715 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 TRAPPC2LH3BP13 241 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 NXPH2O95156 264 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 CYB5AP00167 134 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 PGA5P0DJD9 388 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 CLDN12P56749 244 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 MRPS11P82912 194 aaKnown RBP11.52□□□□□ -0.57
CD44-224ENST00000526669 CTF1Q16619 201 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 ZNF181Q2M3W8 571 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 LYPD6Q86Y78 171 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 MKXQ8IYA7 352 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 C1orf87Q8N0U7 546 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 POC1AQ8NBT0 407 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 NDNFQ8TB73 568 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 C10orf105Q8TEF2 133 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 CEP19Q96LK0 163 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 PIMREGQ9BSJ6 248 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 BPESC1Q9GZL8 116 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 MYOZ1Q9NP98 299 aaPredicted RBP11.52□□□□□ -0.57
CD44-224ENST00000526669 RBFOX1Q9NWB1 397 aaKnown RBP11.52□□□□□ -0.57
CD44-224ENST00000526669 IL36RNQ9UBH0 155 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 POLDIP2Q9Y2S7 368 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 WIPI2Q9Y4P8 454 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 NPTNQ9Y639 398 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 CEPT1Q9Y6K0 416 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 V9GY05 133 aa11.52□□□□□ -0.57
CD44-224ENST00000526669 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.52□□□□□ -0.57
CD44-224ENST00000526669 FLNAP21333 2647 aaKnown RBP11.51□□□□□ -0.57
CD44-224ENST00000526669 PPIAL4EA0A075B759 164 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 A0A0B4J203 849 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 A0A0G2JK05 382 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 A0A1W2PP11 408 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 PPIAL4DF5H284 164 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 IFNL4K9M1U5 179 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 NOL3O60936 208 aaKnown RBP11.51□□□□□ -0.57
CD44-224ENST00000526669 HTR3BO95264 441 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 CSF3P09919 207 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 PPIAL4FP0DN26 164 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 SLC2A2P11168 524 aaPredicted RBP11.51□□□□□ -0.57
CD44-224ENST00000526669 PRKACAP17612 351 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 SERPINA2P20848 420 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 PTGFRP43088 359 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 RIN1Q13671 783 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 ZMYND11Q15326 602 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 RSU1Q15404 277 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 RAB11BQ15907 218 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 GLIPR1L1Q6UWM5 242 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 OR5T2Q8NGG2 359 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 EMG1Q92979 244 aaKnown RBP11.51□□□□□ -0.57
CD44-224ENST00000526669 TIMD4Q96H15 378 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 Q96MF0 132 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 S100A13Q99584 98 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 DNAJB11Q9UBS4 358 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 PPIAL4AQ9Y536 164 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 CREBBPQ92793 2442 aa11.51□□□□□ -0.57
CD44-224ENST00000526669 ABCA1O95477 2261 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 OOEPA6NGQ2 149 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.5□□□□□ -0.57
CD44-224ENST00000526669 LGALS8O00214 317 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 SLC17A2O00624 439 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 LHBP01229 141 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 IGHV2-70P01814 119 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 GYPAP02724 150 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 SFTPBP07988 381 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 HTR2CP28335 458 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 RPS19P39019 145 aaKnown RBP11.5□□□□□ -0.57
CD44-224ENST00000526669 CEBPDP49716 269 aaPredicted RBP11.5□□□□□ -0.57
CD44-224ENST00000526669 BTG1P62324 171 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 SPCS2Q15005 226 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 SLC22A6Q4U2R8 563 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 C1orf100Q5SVJ3 147 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 METAP1DQ6UB28 335 aaPredicted RBP11.5□□□□□ -0.57
CD44-224ENST00000526669 ACP7Q6ZNF0 438 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 DNM1P46Q6ZS02 220 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 PEG10Q86TG7 708 aaKnown RBP11.5□□□□□ -0.57
CD44-224ENST00000526669 WFDC11Q8NEX6 87 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 RAB1CQ92928 201 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 ISOC1Q96CN7 298 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 FOXRED1Q96CU9 486 aaPredicted RBP11.5□□□□□ -0.57
CD44-224ENST00000526669 FOXC2Q99958 501 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 NRIP2Q9BQI9 281 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 UQCC2Q9BRT2 126 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 METTL9Q9H1A3 318 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 OR14J1Q9UGF5 321 aa11.5□□□□□ -0.57
CD44-224ENST00000526669 DPPA5A6NC42 116 aa11.49□□□□□ -0.57
CD44-224ENST00000526669 KDM4BO94953 1096 aa11.49□□□□□ -0.57
CD44-224ENST00000526669 GIFP27352 417 aa11.49□□□□□ -0.57
CD44-224ENST00000526669 DUSP1P28562 367 aa11.49□□□□□ -0.57
CD44-224ENST00000526669 CFHR2P36980 270 aa11.49□□□□□ -0.57
CD44-224ENST00000526669 TMEM33P57088 247 aa11.49□□□□□ -0.57
CD44-224ENST00000526669 ERVK11-1P61568 191 aa11.49□□□□□ -0.57
CD44-224ENST00000526669 PDCD1Q15116 288 aa11.49□□□□□ -0.57
CD44-224ENST00000526669 OR10K2Q6IF99 312 aa11.49□□□□□ -0.57
CD44-224ENST00000526669 SFXN4Q6P4A7 337 aa11.49□□□□□ -0.57
CD44-224ENST00000526669 TPRA1Q86W33 373 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms