RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 MRPS28Q9Y2Q9 187 aaKnown RBP12.56□□□□□ -0.4
NUP54-213ENST00000513352 AK6Q9Y3D8 172 aaKnown RBP12.56□□□□□ -0.4
NUP54-213ENST00000513352 SMIM30A4D0T7 59 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 VWC2LB2RUY7 222 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 SMAD7O15105 426 aaKnown RBP12.55□□□□□ -0.4
NUP54-213ENST00000513352 LHBP01229 141 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 GYPAP02724 150 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 CALCBP10092 127 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 USF1P22415 310 aaPredicted RBP12.55□□□□□ -0.4
NUP54-213ENST00000513352 PTGFRP43088 359 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 RPL5P46777 297 aaKnown RBP12.55□□□□□ -0.4
NUP54-213ENST00000513352 ZP1P60852 638 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 RSU1Q15404 277 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 KCNJ8Q15842 424 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 SMIM21Q3B7S5 101 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 AWAT2Q6E213 333 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 MUC20Q8N307 709 aaPredicted RBP12.55□□□□□ -0.4
NUP54-213ENST00000513352 SPICQ8N5J4 248 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 MAPK1IP1LQ8NDC0 245 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 OR5T2Q8NGG2 359 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 OR10K1Q8NGX5 313 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 NRIP2Q9BQI9 281 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 CENPOQ9BU64 300 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 CNTD2Q9H8S5 307 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 PLGRKTQ9HBL7 147 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 MTCH1Q9NZJ7 389 aa12.55□□□□□ -0.4
NUP54-213ENST00000513352 CREBBPQ92793 2442 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 TRAV1-2A0A0B4J238 106 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 IGHV4-61A0A0C4DH41 118 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 IGKV1-12A0A0C4DH73 117 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 NKX6-3A6NJ46 265 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 H7C1Q1 480 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 CDRT1O95170 752 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 IGKV1D-12P01611 117 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 HEXAP06865 529 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 PRKACAP17612 351 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 RAB3BP20337 219 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 NPBWR2P48146 333 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 MXD1Q05195 221 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 ZNF404Q494X3 552 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 CRIP3Q6Q6R5 217 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 FIP1L1Q6UN15 594 aaKnown RBP12.54□□□□□ -0.4
NUP54-213ENST00000513352 ACP7Q6ZNF0 438 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 LRRC28Q86X40 367 aaPredicted RBP12.54□□□□□ -0.4
NUP54-213ENST00000513352 FAM90A1Q86YD7 464 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 CDH26Q8IXH8 852 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 Q8IYB0 196 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 SAXO1Q8IYX7 474 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 ZSCAN4Q8NAM6 433 aaPredicted RBP12.54□□□□□ -0.4
NUP54-213ENST00000513352 CLDND2Q8NHS1 167 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 FOXRED1Q96CU9 486 aaPredicted RBP12.54□□□□□ -0.4
NUP54-213ENST00000513352 TMEM246Q9BRR3 403 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 METTL9Q9H1A3 318 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 RBFOX1Q9NWB1 397 aaKnown RBP12.54□□□□□ -0.4
NUP54-213ENST00000513352 RASL12Q9NYN1 266 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 NLKQ9UBE8 527 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 OR14J1Q9UGF5 321 aa12.54□□□□□ -0.4
NUP54-213ENST00000513352 MAP1AP78559 2803 aaPredicted RBP12.54□□□□□ -0.4
NUP54-213ENST00000513352 SHISA3A0PJX4 238 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.53□□□□□ -0.4
NUP54-213ENST00000513352 NOL3O60936 208 aaKnown RBP12.53□□□□□ -0.4
NUP54-213ENST00000513352 NOS1APO75052 506 aaPredicted RBP12.53□□□□□ -0.4
NUP54-213ENST00000513352 HTR3BO95264 441 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 CSTBP04080 98 aaKnown RBP12.53□□□□□ -0.4
NUP54-213ENST00000513352 RPS2P15880 293 aaKnown RBP12.53□□□□□ -0.4
NUP54-213ENST00000513352 MUC1P15941 1255 aaPredicted RBP12.53□□□□□ -0.4
NUP54-213ENST00000513352 SERPINA2P20848 420 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 SDC2P34741 201 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 GABRA2P47869 451 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 MTNR1BP49286 362 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 OR10A3P58181 314 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 RAB11BQ15907 218 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 SLC22A6Q4U2R8 563 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 TMEM155Q4W5P6 130 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 TEX36Q5VZQ5 186 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 GLIPR1L1Q6UWM5 242 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 GDPGP1Q6ZNW5 385 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 C1QL2Q7Z5L3 287 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 CLVS1Q8IUQ0 354 aaPredicted RBP12.53□□□□□ -0.4
NUP54-213ENST00000513352 FAM58AQ8N1B3 248 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 OR4D6Q8NGJ1 314 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 UQCC2Q9BRT2 126 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 NAA50Q9GZZ1 169 aaKnown RBP12.53□□□□□ -0.4
NUP54-213ENST00000513352 TMEM165Q9HC07 324 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 V9GY05 133 aa12.53□□□□□ -0.4
NUP54-213ENST00000513352 CR1P17927 2039 aa12.52□□□□□ -0.4
NUP54-213ENST00000513352 OR2AT4A6NND4 320 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 CEACAM18A8MTB9 384 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 F8VVB4 439 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 F8VWA3 439 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 ADAM20O43506 726 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 KDM4BO94953 1096 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 TFF1P04155 84 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 SFTPBP07988 381 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 HTR2CP28335 458 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 TGFBR1P36897 503 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 PSMD7P51665 324 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 ERVK11-1P61568 191 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 VBP1P61758 197 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 P2RY14Q15391 338 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms