RNA–Protein interactions for RNA: ENST00000508235.1

RNF4-210, Transcript of ring finger protein 4, human

TSL 3

Gene RNF4, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-210	ENST00000508235	FIP1L1	Q6UN15	594 aa	Known RBP	12.5	□□□□□ -0.41
RNF4-210	ENST00000508235	BTNL3	Q6UXE8	466 aa		12.5	□□□□□ -0.41
RNF4-210	ENST00000508235	SVOP	Q8N4V2	548 aa		12.5	□□□□□ -0.41
RNF4-210	ENST00000508235	UFD1	Q92890	307 aa		12.5	□□□□□ -0.41
RNF4-210	ENST00000508235	FAHD2A	Q96GK7	314 aa		12.5	□□□□□ -0.41
RNF4-210	ENST00000508235	OR5M11	Q96RB7	305 aa		12.5	□□□□□ -0.41
RNF4-210	ENST00000508235	BEX2	Q9BXY8	128 aa		12.5	□□□□□ -0.41
RNF4-210	ENST00000508235	RHOF	Q9HBH0	211 aa		12.5	□□□□□ -0.41
RNF4-210	ENST00000508235	HES4	Q9HCC6	221 aa		12.5	□□□□□ -0.41
RNF4-210	ENST00000508235	TMEM138	Q9NPI0	162 aa		12.5	□□□□□ -0.41
RNF4-210	ENST00000508235	SNTG1	Q9NSN8	517 aa		12.5	□□□□□ -0.41
RNF4-210	ENST00000508235	CTSZ	Q9UBR2	303 aa		12.5	□□□□□ -0.41
RNF4-210	ENST00000508235	ZNF469	Q96JG9	3925 aa	Predicted RBP	12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	TRAPPC2L	H3BP13	241 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	GPR37	O15354	613 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	ECD	O95905	644 aa	Predicted RBP	12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	PLAT	P00750	562 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	ALDOB	P05062	364 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	ZFP36	P26651	326 aa	Known RBP	12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	POU3F4	P49335	361 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	ERVK11-1	P61568	191 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	RPS11	P62280	158 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	IL13RA1	P78552	427 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	MLLT11	Q13015	90 aa	Predicted RBP	12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	PDZK1IP1	Q13113	114 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	LRRC10	Q5BKY1	277 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	ZNF529	Q6P280	563 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	ZNF841	Q6ZN19	808 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	SAXO1	Q8IYX7	474 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	OR5T2	Q8NGG2	359 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	ANGPTL6	Q8NI99	470 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	CCL13	Q99616	98 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	MRI1	Q9BV20	369 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	TAS2R4	Q9NYW5	299 aa		12.49	□□□□□ -0.41
RNF4-210	ENST00000508235	LOC105371242	A0A075B767	164 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	ZNF879	B4DU55	563 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	DVL1	O14640	695 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	ENSA	O43768	121 aa	Known RBP	12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	GPX5	O75715	221 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	KNG1	P01042	644 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	HSMCR30	P0CW71	290 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	PSG2	P11465	335 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	FST	P19883	344 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	GABRA2	P47869	451 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	TRAM1	Q15629	374 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	KISS1	Q15726	138 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	ZNF788	Q6ZQV5	615 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	ZNF367	Q7RTV3	350 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	ZNF561	Q8N587	486 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	OR13C5	Q8NGS8	318 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	RAB40A	Q8WXH6	277 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	SLAMF9	Q96A28	289 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	SEH1L	Q96EE3	360 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	ZNF488	Q96MN9	340 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	OR14A2	Q96R54	314 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	GPER1	Q99527	375 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	MTCH1	Q9NZJ7	389 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	FOXJ3	Q9UPW0	622 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	INSIG2	Q9Y5U4	225 aa		12.48	□□□□□ -0.41
RNF4-210	ENST00000508235	VPS13C	Q709C8	3753 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	IGKV1D-17	A0A075B6S4	117 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	TRBV5-7	A0A0A0MS05	114 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	IGHV2-70D	A0A0C4DH43	119 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	RFPL4A	A6NLU0	287 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	RFPL4AL1	F8VTS6	287 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	SIGLEC5	O15389	551 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	LIPF	P07098	398 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	TMEM225B	P0DP42	221 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	PSMA1	P25786	263 aa	Known RBP	12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	BDKRB2	P30411	391 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	TGFBR2	P37173	567 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	BMX	P51813	675 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	TPBG	Q13641	420 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	DOC2B	Q14184	412 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	PNLDC1	Q8NA58	520 aa	Known RBP	12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	ST8SIA4	Q92187	359 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	RFT1	Q96AA3	541 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	SDSL	Q96GA7	329 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	DERL3	Q96Q80	235 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	MGLL	Q99685	303 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	C7orf69	Q9H7B7	122 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	SMURF1	Q9HCE7	757 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	GLS2	Q9UI32	602 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	LRRC42	Q9Y546	428 aa		12.47	□□□□□ -0.41
RNF4-210	ENST00000508235	ARHGAP32	A7KAX9	2087 aa		12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	SPRY1	O43609	319 aa	Predicted RBP	12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	FAM157C	P0CG43	387 aa		12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	CPE	P16870	476 aa		12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	IGFBP3	P17936	291 aa	Predicted RBP	12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	SRD5A1	P18405	259 aa		12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	PRDX2	P32119	198 aa		12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	SRP14	P37108	136 aa	Known RBP	12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	MAP2K4	P45985	399 aa		12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	CAV3	P56539	151 aa		12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	SCGB2A2	Q13296	93 aa		12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	IKZF1	Q13422	519 aa		12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	SATL1	Q86VE3	508 aa		12.46	□□□□□ -0.41
RNF4-210	ENST00000508235	FAM58A	Q8N1B3	248 aa		12.46	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 165.8 ms