RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 GEMIN2O14893 280 aaKnown RBP7.58□□□□□ -1.2
USP40-203ENST00000427112 PHF1O43189 567 aaPredicted RBP7.58□□□□□ -1.2
USP40-203ENST00000427112 DUX1O43812 170 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 YIF1AO95070 293 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 PPP1CCP36873 323 aaKnown RBP7.58□□□□□ -1.2
USP40-203ENST00000427112 IGLV3-21P80748 117 aaPredicted RBP7.58□□□□□ -1.2
USP40-203ENST00000427112 ZXDAP98168 799 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 ROM1Q03395 351 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 GGNBP1Q5YKI7 109 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 SLC22A25Q6T423 547 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 TMEM156Q8N614 296 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 UBAC2Q8NBM4 344 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 FNDC9Q8TBE3 224 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 MARS2Q96GW9 593 aaKnown RBP7.58□□□□□ -1.2
USP40-203ENST00000427112 NRIP2Q9BQI9 281 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 MRI1Q9BV20 369 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 OCIAD1Q9NX40 245 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 MED13Q9UHV7 2174 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 FAM24AA6NFZ4 105 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 MT-ATP6P00846 226 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 ZNF17P17021 662 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 HNRNPKP61978 463 aaKnown RBP eCLIP7.58□□□□□ -1.2
USP40-203ENST00000427112 PEG10Q86TG7 708 aaKnown RBP7.58□□□□□ -1.2
USP40-203ENST00000427112 NAT6Q93015 286 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 PLPPR2Q96GM1 343 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 LYZL4Q96KX0 146 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 DMXL1Q9Y485 3027 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 NPIPA2E9PIF3 369 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 NPIPA3F8WFD2 350 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 C17orf67Q0P5P2 114 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 ZNF124Q15973 351 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 MST1LQ2TV78 715 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 AWAT1Q58HT5 328 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 PABPC1L2AQ5JQF8 200 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 Q5PR19 223 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 CDPF1Q6NVV7 123 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 IL1F10Q8WWZ1 152 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 MR1Q95460 341 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 ZNF488Q96MN9 340 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 LRFN5Q96NI6 719 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 UTP23Q9BRU9 249 aaKnown RBP7.58□□□□□ -1.2
USP40-203ENST00000427112 URM1Q9BTM9 101 aaKnown RBP7.58□□□□□ -1.2
USP40-203ENST00000427112 GHRLQ9UBU3 117 aa7.58□□□□□ -1.2
USP40-203ENST00000427112 BTBD17A6NE02 478 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 NPIPB7O75200 414 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 SFT2D2O95562 160 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 OR5H8P0DN80 308 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 ACKR3P25106 362 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 SPEM2Q0P670 501 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.57□□□□□ -1.2
USP40-203ENST00000427112 RTL10Q7L3V2 364 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 HOGA1Q86XE5 327 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 TMEM123Q8N131 208 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 FBXL14Q8N1E6 418 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 KCNG3Q8TAE7 436 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 POC1BQ8TC44 478 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 AKAP6Q13023 2319 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 SHISA7A6NL88 538 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 PATE3B3GLJ2 98 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 CNOT4O95628 575 aaKnown RBP7.57□□□□□ -1.2
USP40-203ENST00000427112 IFNA10P01566 189 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 CD8AP01732 235 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 CD74P04233 296 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 IFNA4P05014 189 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 CCL3P10147 92 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 SELEP16581 610 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 ZNF708P17019 499 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 CSNK1A1P48729 337 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 PJVKQ0ZLH3 352 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 KIAA0141Q14154 515 aaPredicted RBP7.57□□□□□ -1.2
USP40-203ENST00000427112 ISXQ2M1V0 245 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 AADACL3Q5VUY0 350 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 NSUN5P2Q63ZY6 315 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 ANKRD37Q7Z713 158 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 PLXDC1Q8IUK5 500 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 KIRREL1Q96J84 757 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 MFRPQ9BY79 579 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 LPAR3Q9UBY5 353 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 GPR132Q9UNW8 380 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 B3GALT5Q9Y2C3 310 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 HSD17B6O14756 317 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 LDLRAD4O15165 306 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 SNAPINO95295 136 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 HLA-HP01893 362 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 CCL4P13236 92 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 CCL20P78556 96 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 MPPED2Q15777 294 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 FBXW12Q6X9E4 464 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 ZNF565Q8N9K5 539 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 HOXB13Q92826 284 aaPredicted RBP7.57□□□□□ -1.2
USP40-203ENST00000427112 HS3ST6Q96QI5 342 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 PECRQ9BY49 303 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 PLCE1Q9P212 2302 aa7.57□□□□□ -1.2
USP40-203ENST00000427112 A0A087WZY1 265 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 IGKV3D-11A0A0A0MRZ8 115 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 A0A0G2JMM0 328 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 A0A1W2PPB8 328 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 A0A1W2PRS3 328 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 KIR3DP1A8MWS1 328 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 PIAS2O75928 621 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms