RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 POC1BQ8TC44 478 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 SGK3Q96BR1 496 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 PLEKHJ1Q9NW61 149 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 B3GALT1Q9Y5Z6 326 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 EML6Q6ZMW3 1958 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 OR5H15A6NDH6 313 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 CDRT15L2A8MXV6 281 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 IFNA21P01568 189 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 OR5H8P0DN80 308 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 PDCD1Q15116 288 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 TAF9Q16594 264 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 OR5L1Q8NGL2 311 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 ST8SIA1Q92185 356 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 PGAM5Q96HS1 289 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 PAPOLGQ9BWT3 736 aaKnown RBP16.13■□□□□ 0.17
CCDC3-201ENST00000378825 ALKBH4Q9NXW9 302 aa16.13■□□□□ 0.17
CCDC3-201ENST00000378825 SLC33A1O00400 549 aaPredicted RBP16.12■□□□□ 0.17
CCDC3-201ENST00000378825 FBP1P09467 338 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 SLC35A1P78382 337 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 C17orf67Q0P5P2 114 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 ZNF600Q6ZNG1 722 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 DOK3Q7L591 496 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 ZDHHC12Q96GR4 267 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 ARV1Q9H2C2 271 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 KCNJ16Q9NPI9 418 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 URGCP-MRPS24S4R325 110 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 COL5A1P20908 1838 aaPredicted RBP16.12■□□□□ 0.17
CCDC3-201ENST00000378825 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 SPRY1O43609 319 aaPredicted RBP16.12■□□□□ 0.17
CCDC3-201ENST00000378825 IGHG1P01857 330 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 ZNF43P17038 809 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 RPS10P46783 165 aaKnown RBP16.12■□□□□ 0.17
CCDC3-201ENST00000378825 HAGHQ16775 308 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 PYY3Q5JQD4 70 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 C5orf24Q7Z6I8 188 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 LRRC18Q8N456 261 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 TCTEX1D2Q8WW35 142 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 SLAMF9Q96A28 289 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 TUBA4BQ9H853 241 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 KLRF1Q9NZS2 232 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 HDGFL3Q9Y3E1 203 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 FRYQ5TBA9 3013 aa16.12■□□□□ 0.17
CCDC3-201ENST00000378825 EXPH5Q8NEV8 1989 aa16.11■□□□□ 0.17
CCDC3-201ENST00000378825 OR2B11Q5JQS5 317 aa16.11■□□□□ 0.17
CCDC3-201ENST00000378825 LUZP4Q9P127 313 aa16.11■□□□□ 0.17
CCDC3-201ENST00000378825 CCDC187A0A096LP49 1063 aa16.11■□□□□ 0.17
CCDC3-201ENST00000378825 CTSDP07339 412 aaPredicted RBP16.11■□□□□ 0.17
CCDC3-201ENST00000378825 CCL1P22362 96 aa16.11■□□□□ 0.17
CCDC3-201ENST00000378825 UCP2P55851 309 aa16.11■□□□□ 0.17
CCDC3-201ENST00000378825 HMGN3Q15651 99 aa16.11■□□□□ 0.17
CCDC3-201ENST00000378825 SLC25A47Q6Q0C1 308 aa16.11■□□□□ 0.17
CCDC3-201ENST00000378825 SLC35B3Q9H1N7 401 aa16.11■□□□□ 0.17
CCDC3-201ENST00000378825 MOB1AQ9H8S9 216 aa16.11■□□□□ 0.17
CCDC3-201ENST00000378825 OR2C1O95371 312 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 FAM69BQ5VUD6 431 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 BATF2Q8N1L9 274 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 OR1J1Q8NGS3 322 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 MR1Q95460 341 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 GPHA2Q96T91 129 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 ANXA10Q9UJ72 324 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 PIGLQ9Y2B2 252 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 MUC3AQ02505 3323 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 NPIPB13A6NJU9 1138 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 ZNF850A8MQ14 1090 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 NPIPB4C9JG80 1138 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 LMO7DNF2Z398 122 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 SEC11BP0C7V7 166 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 PRF1P14222 555 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 OMGP23515 440 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 P2RY1P47900 373 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 STARD6P59095 220 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 KIAA0141Q14154 515 aaPredicted RBP16.1■□□□□ 0.17
CCDC3-201ENST00000378825 TMEM187Q14656 261 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 RSPO1Q2MKA7 263 aaPredicted RBP16.1■□□□□ 0.17
CCDC3-201ENST00000378825 PDZD11Q5EBL8 140 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 PHYHD1Q5SRE7 291 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 CPEB2Q7Z5Q1 589 aaKnown RBP16.1■□□□□ 0.17
CCDC3-201ENST00000378825 SUMF1Q8NBK3 374 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 SLC22A8Q8TCC7 542 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 STT3BQ8TCJ2 826 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 RTN4IP1Q8WWV3 396 aaPredicted RBP16.1■□□□□ 0.17
CCDC3-201ENST00000378825 GINS3Q9BRX5 216 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 GPR173Q9NS66 373 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 SERPINE3A8MV23 424 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 E5RGE8 158 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 PNLIPP16233 465 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 HTR5AP47898 357 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 SURF2Q15527 256 aaPredicted RBP16.1■□□□□ 0.17
CCDC3-201ENST00000378825 YPEL4Q96NS1 127 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 AK3Q9UIJ7 227 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 NSG2Q9Y328 171 aa16.1■□□□□ 0.17
CCDC3-201ENST00000378825 CCDC163A0A0D9SF12 145 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 A0A1W2PNV4 684 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 PMELP40967 661 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 HAAOP46952 286 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 CSNK1A1P48729 337 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 NDUFA6P56556 154 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 GFI1BQ5VTD9 330 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 HEPN1Q6WQI6 88 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 OR10G3Q8NGC4 313 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms