RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 CHIAQ9BZP6 476 aa15.08■□□□□ 0
CLN3-202ENST00000355477 PKIBQ9C010 78 aa15.08■□□□□ 0
CLN3-202ENST00000355477 CHST5Q9GZS9 411 aa15.08■□□□□ 0
CLN3-202ENST00000355477 PCDHGB1Q9Y5G3 927 aa15.08■□□□□ 0
CLN3-202ENST00000355477 A0A1W2PQ09 198 aa15.07■□□□□ 0
CLN3-202ENST00000355477 SNTNA6NMZ2 147 aa15.07■□□□□ 0
CLN3-202ENST00000355477 FUT6P51993 359 aa15.07■□□□□ 0
CLN3-202ENST00000355477 CAPZA1P52907 286 aa15.07■□□□□ 0
CLN3-202ENST00000355477 TMEM244Q5VVB8 128 aa15.07■□□□□ 0
CLN3-202ENST00000355477 C1orf122Q6ZSJ8 110 aa15.07■□□□□ 0
CLN3-202ENST00000355477 OR10AC1Q8NH08 325 aa15.07■□□□□ 0
CLN3-202ENST00000355477 C4orf36Q96KX1 117 aa15.07■□□□□ 0
CLN3-202ENST00000355477 ZNF649Q9BS31 505 aa15.07■□□□□ 0
CLN3-202ENST00000355477 ISG20L2Q9H9L3 353 aaKnown RBP15.07■□□□□ 0
CLN3-202ENST00000355477 C19orf12Q9NSK7 152 aa15.07■□□□□ 0
CLN3-202ENST00000355477 MTCH1Q9NZJ7 389 aa15.07■□□□□ 0
CLN3-202ENST00000355477 OR14J1Q9UGF5 321 aa15.07■□□□□ 0
CLN3-202ENST00000355477 MGAM2Q2M2H8 2515 aa15.07■□□□□ 0
CLN3-202ENST00000355477 IGKV1-9A0A0C4DH69 117 aa15.06■□□□□ 0
CLN3-202ENST00000355477 A0A1W2PRD5 423 aa15.06■□□□□ 0
CLN3-202ENST00000355477 A0A1W2PRF3 423 aa15.06■□□□□ 0
CLN3-202ENST00000355477 A0A1W2PRM7 423 aa15.06■□□□□ 0
CLN3-202ENST00000355477 FAM181BA6NEQ2 426 aa15.06■□□□□ 0
CLN3-202ENST00000355477 M0R1W7 72 aa15.06■□□□□ 0
CLN3-202ENST00000355477 MPZL2O60487 215 aa15.06■□□□□ 0
CLN3-202ENST00000355477 GATBO75879 557 aaKnown RBP15.06■□□□□ 0
CLN3-202ENST00000355477 INMTO95050 263 aa15.06■□□□□ 0
CLN3-202ENST00000355477 SERPINA3P01011 423 aa15.06■□□□□ 0
CLN3-202ENST00000355477 ISG15P05161 165 aa15.06■□□□□ 0
CLN3-202ENST00000355477 HTR1AP08908 422 aa15.06■□□□□ 0
CLN3-202ENST00000355477 OMGP23515 440 aa15.06■□□□□ 0
CLN3-202ENST00000355477 GALEQ14376 348 aa15.06■□□□□ 0
CLN3-202ENST00000355477 FAM185AQ8N0U4 392 aa15.06■□□□□ 0
CLN3-202ENST00000355477 PNKDQ8N490 385 aa15.06■□□□□ 0
CLN3-202ENST00000355477 ZNF561Q8N587 486 aa15.06■□□□□ 0
CLN3-202ENST00000355477 OR51A4Q8NGJ6 313 aa15.06■□□□□ 0
CLN3-202ENST00000355477 APH1BQ8WW43 257 aa15.06■□□□□ 0
CLN3-202ENST00000355477 SLAMF9Q96A28 289 aa15.06■□□□□ 0
CLN3-202ENST00000355477 FGGYQ96C11 551 aa15.06■□□□□ 0
CLN3-202ENST00000355477 C10orf35Q96D05 121 aa15.06■□□□□ 0
CLN3-202ENST00000355477 Q96MT0 163 aa15.06■□□□□ 0
CLN3-202ENST00000355477 ALG8Q9BVK2 526 aa15.06■□□□□ 0
CLN3-202ENST00000355477 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.06■□□□□ 0
CLN3-202ENST00000355477 TRRAPQ9Y4A5 3859 aa15.06■□□□□ 0
CLN3-202ENST00000355477 TRBV23-1A0A0A0MS06 115 aa15.05■□□□□ -0
CLN3-202ENST00000355477 OR4C45A6NMZ5 311 aa15.05■□□□□ -0
CLN3-202ENST00000355477 SLC1A7O00341 560 aa15.05■□□□□ -0
CLN3-202ENST00000355477 IGHA1P01876 353 aa15.05■□□□□ -0
CLN3-202ENST00000355477 CCR9P51686 369 aa15.05■□□□□ -0
CLN3-202ENST00000355477 TMEM200BQ69YZ2 307 aa15.05■□□□□ -0
CLN3-202ENST00000355477 FIP1L1Q6UN15 594 aaKnown RBP15.05■□□□□ -0
CLN3-202ENST00000355477 SLC25A26Q70HW3 274 aa15.05■□□□□ -0
CLN3-202ENST00000355477 TMEM86BQ8N661 226 aa15.05■□□□□ -0
CLN3-202ENST00000355477 OR4M1Q8NGD0 313 aa15.05■□□□□ -0
CLN3-202ENST00000355477 PP6455Q8WZ26 134 aa15.05■□□□□ -0
CLN3-202ENST00000355477 ZNF747Q9BV97 191 aa15.05■□□□□ -0
CLN3-202ENST00000355477 UNKLQ9H9P5 680 aaKnown RBP15.05■□□□□ -0
CLN3-202ENST00000355477 E9PI62 339 aa15.04■□□□□ -0
CLN3-202ENST00000355477 NPFFO15130 113 aa15.04■□□□□ -0
CLN3-202ENST00000355477 KNG1P01042 644 aa15.04■□□□□ -0
CLN3-202ENST00000355477 IGHV4-59P01825 116 aa15.04■□□□□ -0
CLN3-202ENST00000355477 IER3P46695 156 aa15.04■□□□□ -0
CLN3-202ENST00000355477 ACTA2P62736 377 aa15.04■□□□□ -0
CLN3-202ENST00000355477 ACTG2P63267 376 aa15.04■□□□□ -0
CLN3-202ENST00000355477 ALKBH1Q13686 389 aaKnown RBP15.04■□□□□ -0
CLN3-202ENST00000355477 CNN3Q15417 329 aaKnown RBP15.04■□□□□ -0
CLN3-202ENST00000355477 SMN1Q16637 294 aaKnown RBP15.04■□□□□ -0
CLN3-202ENST00000355477 HCP5Q6MZN7 132 aa15.04■□□□□ -0
CLN3-202ENST00000355477 UTS2BQ765I0 119 aa15.04■□□□□ -0
CLN3-202ENST00000355477 LDLRAD3Q86YD5 345 aa15.04■□□□□ -0
CLN3-202ENST00000355477 OR52I1Q8NGK6 324 aa15.04■□□□□ -0
CLN3-202ENST00000355477 SSMEM1Q8WWF3 244 aa15.04■□□□□ -0
CLN3-202ENST00000355477 BORCS8Q96FH0 119 aa15.04■□□□□ -0
CLN3-202ENST00000355477 CEP19Q96LK0 163 aa15.04■□□□□ -0
CLN3-202ENST00000355477 METTL8Q9H825 291 aaKnown RBP15.04■□□□□ -0
CLN3-202ENST00000355477 MRPS18AQ9NVS2 196 aaKnown RBP15.04■□□□□ -0
CLN3-202ENST00000355477 ERVK13-1Q9NX77 482 aa15.04■□□□□ -0
CLN3-202ENST00000355477 SMPD3Q9NY59 655 aaPredicted RBP15.04■□□□□ -0
CLN3-202ENST00000355477 POMT1Q9Y6A1 747 aa15.04■□□□□ -0
CLN3-202ENST00000355477 KIAA2026Q5HYC2 2103 aa15.04■□□□□ -0
CLN3-202ENST00000355477 WBP4O75554 376 aaKnown RBP15.03■□□□□ -0
CLN3-202ENST00000355477 FADS2O95864 444 aaKnown RBP15.03■□□□□ -0
CLN3-202ENST00000355477 TK1P04183 234 aa15.03■□□□□ -0
CLN3-202ENST00000355477 ATF1P18846 271 aa15.03■□□□□ -0
CLN3-202ENST00000355477 MDKP21741 143 aaPredicted RBP15.03■□□□□ -0
CLN3-202ENST00000355477 NPBWR2P48146 333 aa15.03■□□□□ -0
CLN3-202ENST00000355477 UBE2E1P51965 193 aa15.03■□□□□ -0
CLN3-202ENST00000355477 RPL31P62899 125 aaKnown RBP15.03■□□□□ -0
CLN3-202ENST00000355477 RELBQ01201 579 aa15.03■□□□□ -0
CLN3-202ENST00000355477 GUCA2AQ02747 115 aa15.03■□□□□ -0
CLN3-202ENST00000355477 COL10A1Q03692 680 aa15.03■□□□□ -0
CLN3-202ENST00000355477 RAB40BQ12829 278 aa15.03■□□□□ -0
CLN3-202ENST00000355477 LRRC36Q1X8D7 754 aa15.03■□□□□ -0
CLN3-202ENST00000355477 RNF144BQ7Z419 303 aa15.03■□□□□ -0
CLN3-202ENST00000355477 C11orf42Q8N5U0 333 aa15.03■□□□□ -0
CLN3-202ENST00000355477 DNAAF1Q8NEP3 725 aa15.03■□□□□ -0
CLN3-202ENST00000355477 TBC1D15Q8TC07 691 aa15.03■□□□□ -0
CLN3-202ENST00000355477 STMN2Q93045 179 aa15.03■□□□□ -0
CLN3-202ENST00000355477 IL36RNQ9UBH0 155 aa15.03■□□□□ -0
CLN3-202ENST00000355477 HHLA2Q9UM44 414 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms