RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 AQP9O43315 295 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 ALOX12BO75342 701 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 OR5F1O95221 314 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 PSMG1O95456 288 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 TDP2O95551 362 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 HPRT1P00492 218 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 GCGP01275 180 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 CATP04040 527 aaKnown RBP1.51□□□□□ -2.17
CD44-239ENST00000639002 ARG1P05089 322 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 OR8U9P0C7N5 309 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 DUX4L2P0CJ85 424 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 DUX4L3P0CJ86 424 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 DUX4L5P0CJ88 424 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 DUX4L6P0CJ89 424 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 DUX4L7P0CJ90 424 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 RD3LP0DJH9 198 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 RAB3AP20336 220 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 HOXA6P31267 233 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 RPA3P35244 121 aaPredicted RBP1.51□□□□□ -2.17
CD44-239ENST00000639002 CEACAM3P40198 252 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 MAGEA6P43360 314 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 HCAR3P49019 387 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 RAP1GDS1P52306 607 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 AP1S2P56377 157 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 MLF1P58340 268 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 REEP5Q00765 189 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 ZNF616Q08AN1 781 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 C2orf80Q0P641 193 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 STX4Q12846 297 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 IRF4Q15306 451 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 TMED2Q15363 201 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 SNCBQ16143 134 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 BCL2A1Q16548 175 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 TAL2Q16559 108 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 GOLGA7BQ2TAP0 167 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 AKIRIN2Q53H80 203 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 TMEM31Q5JXX7 168 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 CPTPQ5TA50 214 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 OGFRL1Q5TC84 451 aaPredicted RBP1.51□□□□□ -2.17
CD44-239ENST00000639002 SDHAF4Q5VUM1 108 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 RESP18Q5W5W9 173 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 AHSA2Q719I0 299 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 HORMAD1Q86X24 394 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 FUNDC1Q8IVP5 155 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 CBR4Q8N4T8 237 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 CDRT4Q8N9R6 151 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 OR8J2Q8NGG1 315 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 OR9A2Q8NGT5 310 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 OR2A1Q8NGT9 310 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 OR8U1Q8NH10 309 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 OR51F2Q8NH61 342 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 OR51A7Q8NH64 312 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 BAALCQ8WXS3 180 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 OR8D1Q8WZ84 308 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 CDS1Q92903 461 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 CPNE4Q96A23 557 aaPredicted RBP1.51□□□□□ -2.17
CD44-239ENST00000639002 RPEQ96AT9 228 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 OPTNQ96CV9 577 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 CMTM5Q96DZ9 223 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 RILPQ96NA2 401 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 TSNAXQ99598 290 aaKnown RBP1.51□□□□□ -2.17
CD44-239ENST00000639002 DOK1Q99704 481 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 BEX2Q9BXY8 128 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 MRPS26Q9BYN8 205 aaKnown RBP1.51□□□□□ -2.17
CD44-239ENST00000639002 PORCNQ9H237 461 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 TMEM38AQ9H6F2 299 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 UBE2ZQ9H832 354 aaPredicted RBP1.51□□□□□ -2.17
CD44-239ENST00000639002 ACP6Q9NPH0 428 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 FGFR1OP2Q9NVK5 253 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 RMND1Q9NWS8 449 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 DUX4Q9UBX2 424 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 ZNF391Q9UJN7 358 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 RAB23Q9ULC3 237 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 PRELID1Q9Y255 219 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 KDM6BO15054 1643 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 PLB1Q6P1J6 1458 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 RAB3GAP2Q9H2M9 1393 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 ELP1O95163 1332 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 RAD50Q92878 1312 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 EPG5Q9HCE0 2579 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 TRAV19A0A0A6YYK7 116 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 TVP23AA6NH52 213 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 KLRC4-KLRK1H3BQV0 150 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 DFFAO00273 331 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 PLPP3O14495 311 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 CRXO43186 299 aaPredicted RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 RAD51CO43502 376 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 SGCEO43556 437 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 SSNA1O43805 119 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 SLC16A7O60669 478 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 PSIP1O75475 530 aaKnown RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 IL4P05112 153 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 SLC35E2BP0CK96 405 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 OR5H8P0DN80 308 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 NQO1P15559 274 aaKnown RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 LGALS3P17931 250 aaKnown RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 CSNK2A2P19784 350 aaPredicted RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 PVALBP20472 110 aaPredicted RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 TEAD1P28347 426 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 EVI2BP34910 448 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms