RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 DLGAP1O14490 977 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 NPFFO15130 113 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 RPP14O95059 124 aaKnown RBP8.86□□□□□ -0.99
VPS39-208ENST00000564994 CRYBA1P05813 215 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 PGA5P0DJD9 388 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 FCGR1AP12314 374 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 CCL1P22362 96 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 HTR1FP30939 366 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 HAAOP46952 286 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 CEBPDP49716 269 aaPredicted RBP8.86□□□□□ -0.99
VPS39-208ENST00000564994 KRTAP10-3P60369 221 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 TAF9Q16594 264 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 CLVS2Q5SYC1 327 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 HCP5Q6MZN7 132 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 C1orf122Q6ZSJ8 110 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 BATF2Q8N1L9 274 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 TMEM185AQ8NFB2 350 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 OR4F5Q8NH21 305 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 WFDC12Q8WWY7 111 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 DYRK2Q92630 601 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 EME1Q96AY2 570 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 CENPNQ96H22 339 aaPredicted RBP8.86□□□□□ -0.99
VPS39-208ENST00000564994 OSBPL10Q9BXB5 764 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 RIBC2Q9H4K1 309 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 BEX1Q9HBH7 125 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 C19orf12Q9NSK7 152 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 RASL12Q9NYN1 266 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 ZNRD1Q9P1U0 126 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 WARS2Q9UGM6 360 aaKnown RBP8.86□□□□□ -0.99
VPS39-208ENST00000564994 SNX5Q9Y5X3 404 aa8.86□□□□□ -0.99
VPS39-208ENST00000564994 A0A1B0GUS0 222 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 A0A1W2PQ09 198 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 CLPSL1A2RUU4 121 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 SAC3D1A6NKF1 404 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 H3BSH0 61 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 M0R1W7 72 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 WIPF1O43516 503 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 NOS1APO75052 506 aaPredicted RBP8.85□□□□□ -0.99
VPS39-208ENST00000564994 KNG1P01042 644 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 KRT8P05787 483 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 OR2T7P0C7T2 308 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 SAA4P35542 130 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 ACTR3P61158 418 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 GUCA2AQ02747 115 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 ODF4Q2M2E3 257 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 OLFML2AQ68BL7 652 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 ASRGL1Q7L266 308 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 CATSPERDQ86XM0 798 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 ANGPTL5Q86XS5 388 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 ZNF573Q86YE8 665 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 CALHM1Q8IU99 346 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 YIPF7Q8N8F6 280 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 OR2T27Q8NH04 317 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 NPRL2Q8WTW4 380 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 RORBQ92753 470 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 UBE2FQ969M7 185 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 RNF166Q96A37 237 aaPredicted RBP8.85□□□□□ -0.99
VPS39-208ENST00000564994 NRIP2Q9BQI9 281 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 HES4Q9HCC6 221 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 ENOPH1Q9UHY7 261 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 FAM96BQ9Y3D0 163 aa8.85□□□□□ -0.99
VPS39-208ENST00000564994 TRBV23-1A0A0A0MS06 115 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 MEIOCA2RUB1 952 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 METTL15A6NJ78 407 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 DHRS7CA6NNS2 312 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 FBP1P09467 338 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 EEF1B2P24534 225 aaKnown RBP8.84□□□□□ -0.99
VPS39-208ENST00000564994 MPZP25189 248 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 PRDX2P32119 198 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 UBE2E1P51965 193 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 ERVFRD-1P60508 538 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 RPL15P61313 204 aaKnown RBP8.84□□□□□ -0.99
VPS39-208ENST00000564994 ERVK11-1P61568 191 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 ZNF85Q03923 595 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 UBE2V2Q15819 145 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 SMIM21Q3B7S5 101 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 TMEM200BQ69YZ2 307 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 FAM185AQ8N0U4 392 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 PRSS35Q8N3Z0 413 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 C11orf42Q8N5U0 333 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 OR10H4Q8NGA5 316 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 OR8J1Q8NGP2 316 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 LINC01006Q8NI28 216 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 TRMT10AQ8TBZ6 339 aaKnown RBP8.84□□□□□ -0.99
VPS39-208ENST00000564994 C17orf50Q8WW18 174 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 PYDC1Q8WXC3 89 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 AJUBAQ96IF1 538 aa8.84□□□□□ -0.99
VPS39-208ENST00000564994 METTL8Q9H825 291 aaKnown RBP8.84□□□□□ -0.99
VPS39-208ENST00000564994 IGKV1-27A0A075B6S5 117 aa8.83□□□□□ -1
VPS39-208ENST00000564994 ANKRD61A6NGH8 418 aa8.83□□□□□ -1
VPS39-208ENST00000564994 E9PQ18 207 aa8.83□□□□□ -1
VPS39-208ENST00000564994 F8VVB4 439 aa8.83□□□□□ -1
VPS39-208ENST00000564994 F8VWA3 439 aa8.83□□□□□ -1
VPS39-208ENST00000564994 H0YAE9 185 aa8.83□□□□□ -1
VPS39-208ENST00000564994 H3BNX3 289 aa8.83□□□□□ -1
VPS39-208ENST00000564994 CIB2O75838 187 aa8.83□□□□□ -1
VPS39-208ENST00000564994 SULT1C4O75897 302 aa8.83□□□□□ -1
VPS39-208ENST00000564994 NXPH2O95156 264 aa8.83□□□□□ -1
VPS39-208ENST00000564994 ALPLP05186 524 aa8.83□□□□□ -1
VPS39-208ENST00000564994 KIR3DL2P43630 455 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms