RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 MS4A7Q9GZW8 240 aaPredicted RBP15.97■□□□□ 0.15
SHKBP1-201ENST00000291842 A0A1W2PNU3 283 aaPredicted RBP15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 FIGNL2A6NMB9 653 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 CEACAM18A8MTB9 384 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 A8MXK9 166 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 ZNF92Q03936 586 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 PDCD1Q15116 288 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 BVESQ8NE79 360 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 RNF126Q9BV68 326 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 STRADBQ9C0K7 418 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 METTL9Q9H1A3 318 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 METTL8Q9H825 291 aaKnown RBP15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 RASL12Q9NYN1 266 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 SPEF1Q9Y4P9 236 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 TIMM10BQ9Y5J6 103 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 KNTC1P50748 2209 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 FREM1Q5H8C1 2179 aa15.96■□□□□ 0.15
SHKBP1-201ENST00000291842 LNP1A1A4G5 178 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 H0YIZ8 118 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 CNR1P21554 472 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 OPRM1P35372 400 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 ELP2Q6IA86 826 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 ZSCAN4Q8NAM6 433 aaPredicted RBP15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 RRNAD1Q96FB5 475 aaKnown RBP15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 OR10C1Q96KK4 312 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 B8ZZF3 427 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 SIGLEC5O15389 551 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 NRASP01111 189 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 FGF2P09038 288 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 PIGYQ3MUY2 71 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 TSPO2Q5TGU0 170 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 RPUSD3Q6P087 351 aaKnown RBP15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 EMG1Q92979 244 aaKnown RBP15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 BORCS8Q96FH0 119 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 ZNF2Q9BSG1 426 aaPredicted RBP15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 SLC25A32Q9H2D1 315 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 ACKR4Q9NPB9 350 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 PLA2G3Q9NZ20 509 aa15.95■□□□□ 0.14
SHKBP1-201ENST00000291842 FAM221AA4D161 298 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 HOXB5P09067 269 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 CDCP2Q5VXM1 449 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 GLRX5Q86SX6 157 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 SPSB1Q96BD6 273 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 NMES1Q9C002 83 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 GSKIPQ9P0R6 139 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 AK3Q9UIJ7 227 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 A0A096LPE4 126 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 IGKV1-12A0A0C4DH73 117 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 A0A1W2PPZ6 126 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 FAM166BA8MTA8 275 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 ZNF587BE7ETH6 402 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 CYTIPO60759 359 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 NEURL1O76050 574 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 IGKV1D-12P01611 117 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 RPS2P15880 293 aaKnown RBP15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 M6PRP20645 277 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 RBP2P50120 134 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 DBX2Q6ZNG2 339 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 PIGCQ92535 297 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 CPNE4Q96A23 557 aaPredicted RBP15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 SCGB3A2Q96PL1 93 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 ARPC5LQ9BPX5 153 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 FRYQ5TBA9 3013 aa15.94■□□□□ 0.14
SHKBP1-201ENST00000291842 GEMIN2O14893 280 aaKnown RBP15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 CCNOP22674 350 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 FAM3AP98173 230 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 CNN3Q15417 329 aaKnown RBP15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 PABPC1L2AQ5JQF8 200 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 CPEB3Q8NE35 698 aaKnown RBP15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 OR5AC2Q9NZP5 309 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 NOSIPQ9Y314 301 aaKnown RBP15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 A0A0B4J2A0 478 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 CCL2P13500 99 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 LINC00696Q6ZRV3 163 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 MOB3CQ70IA8 216 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 CCDC54Q8NEL0 328 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 OR2M7Q8NG81 312 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 SULT4A1Q9BR01 284 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 SPRY4Q9C004 299 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 RAB18Q9NP72 206 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 SHPKQ9UHJ6 478 aa15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 BOKQ9UMX3 212 aaPredicted RBP15.93■□□□□ 0.14
SHKBP1-201ENST00000291842 MSGN1A6NI15 193 aa15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 EDN3P14138 238 aa15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 PRKACBP22694 351 aa15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 PTGER4P35408 488 aa15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 SNTB1Q13884 538 aaKnown RBP15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 FOXRED2Q8IWF2 684 aa15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 OR51F2Q8NH61 342 aa15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 LIME1Q9H400 295 aa15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 ZNF407Q9C0G0 2248 aa15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 BDP1A6H8Y1 2624 aa15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 hCG_38984A0A1B0GV85 526 aa15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 MRPL33O75394 65 aaKnown RBP15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 SFTPBP07988 381 aa15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 HOXD4P09016 255 aaPredicted RBP15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 FOXG1P55316 489 aaPredicted RBP15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 CYCSP99999 105 aaKnown RBP15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 BTN1A1Q13410 526 aa15.92■□□□□ 0.14
SHKBP1-201ENST00000291842 KRTAP27-1Q3LI81 207 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms