RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 NKAPLQ5M9Q1 402 aa11.21□□□□□ -0.62
SPTLC1-201ENST00000262554 TMPRSS7Q7RTY8 843 aa11.21□□□□□ -0.62
SPTLC1-201ENST00000262554 NUFIP2Q7Z417 695 aaKnown RBP11.21□□□□□ -0.62
SPTLC1-201ENST00000262554 C6orf201Q7Z4U5 140 aa11.21□□□□□ -0.62
SPTLC1-201ENST00000262554 ADAD2Q8NCV1 583 aaKnown RBP11.21□□□□□ -0.62
SPTLC1-201ENST00000262554 PXT1Q8NFP0 134 aa11.21□□□□□ -0.62
SPTLC1-201ENST00000262554 OR5AP2Q8NGF4 316 aa11.21□□□□□ -0.62
SPTLC1-201ENST00000262554 PRR7Q8TB68 274 aa11.21□□□□□ -0.62
SPTLC1-201ENST00000262554 ZDHHC11Q9H8X9 412 aa11.21□□□□□ -0.62
SPTLC1-201ENST00000262554 ASCL3Q9NQ33 180 aa11.21□□□□□ -0.62
SPTLC1-201ENST00000262554 UBQLN2Q9UHD9 624 aa11.21□□□□□ -0.62
SPTLC1-201ENST00000262554 SLC22A20A6NK97 555 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 RFPL4AA6NLU0 287 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 CEACAM18A8MTB9 384 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 RFPL4AL1F8VTS6 287 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 SORDQ00796 357 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 PLP2Q04941 152 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 SRSF4Q08170 494 aaKnown RBP11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 MALLQ13021 153 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 PDZK1IP1Q13113 114 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 RNFT1Q5M7Z0 435 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 APOBEC3DQ96AK3 386 aaPredicted RBP11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 CYYR1Q96J86 154 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 PDCD10Q9BUL8 212 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 FN3KRPQ9HA64 309 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 ZNF701Q9NV72 531 aaPredicted RBP11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 EHFQ9NZC4 300 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 IL36GQ9NZH8 169 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 SPRR3Q9UBC9 169 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 ZNF230Q9UIE0 474 aaPredicted RBP11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 HSF4Q9ULV5 492 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 GPR132Q9UNW8 380 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 MAB21L2Q9Y586 359 aa11.2□□□□□ -0.62
SPTLC1-201ENST00000262554 FIGNL2A6NMB9 653 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 DUS4LO95620 317 aaKnown RBP11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 CD8AP01732 235 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 PPP3CBP16298 524 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 HLA-GP17693 338 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 FPR2P25090 351 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 AGTR1P30556 359 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 S100A11P31949 105 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 NPY4RP50391 375 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 CCL11P51671 97 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 RAB1AP62820 205 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 IKZF1Q13422 519 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 TAF9Q16594 264 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 TMEM128Q5BJH2 165 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 MRPL21Q7Z2W9 205 aaKnown RBP11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 DPPA2Q7Z7J5 298 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 OSR2Q8N2R0 312 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 CASTOR1Q8WTX7 329 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 EMG1Q92979 244 aaKnown RBP11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 MRPS24Q96EL2 167 aaKnown RBP11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 PPA2Q9H2U2 334 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 C12orf49Q9H741 205 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 GP6Q9HCN6 339 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 COMMD9Q9P000 198 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 ZNF175Q9Y473 711 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 ZNF503-AS2A6NEH8 195 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 ZNF850A8MQ14 1090 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 RPUSD3Q6P087 351 aaKnown RBP11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 C3P1Q6ZMU1 363 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 TMUB2Q71RG4 321 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 LHFPL1Q86WI0 220 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 TMEM185AQ8NFB2 350 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 OR13G1Q8NGZ3 307 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 OR51F2Q8NH61 342 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 MAFIPQ8WZ33 124 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 PAPOLGQ9BWT3 736 aaKnown RBP11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 PRSS50Q9UI38 385 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 EDARQ9UNE0 448 aa11.19□□□□□ -0.62
SPTLC1-201ENST00000262554 ZNF318Q5VUA4 2279 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 IGKV1-12A0A0C4DH73 117 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 OR5H14A6NHG9 310 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 SDCBPO00560 298 aaPredicted RBP11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 IGKV1D-12P01611 117 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 CCL2P13500 99 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 RPA2P15927 270 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 MPGP29372 298 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 RAB14P61106 215 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 SRSF6Q13247 344 aaKnown RBP11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 FBXW9Q5XUX1 488 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 SIGIRRQ6IA17 410 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 KCTD9Q7L273 389 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 OVCH2Q7RTZ1 564 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 NAXEQ8NCW5 288 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 OR56B2PQ8NGI1 322 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 NANOS1Q8WY41 292 aaKnown RBP11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 CITED4Q96RK1 184 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 FAAP24Q9BTP7 215 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 IRF2BPLQ9H1B7 796 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 C5orf66Q9H5L9 145 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 OSGIN2Q9Y236 505 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 CSAG2Q9Y5P2 127 aa11.18□□□□□ -0.62
SPTLC1-201ENST00000262554 TRAV14DV4A0A0A6YYC5 116 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 CCSO14618 274 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 RP2O75695 350 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 CFDP00746 253 aaPredicted RBP11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 CHATP28329 748 aa11.17□□□□□ -0.62
SPTLC1-201ENST00000262554 ARPC4P59998 168 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms