RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 VAMP3Q15836 100 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 GUK1Q16774 197 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 SPATA46Q5T0L3 261 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF529Q6P280 563 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 PXT1Q8NFP0 134 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 OR8J1Q8NGP2 316 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 FAM46AQ96IP4 442 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 TXN2Q99757 166 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 SMR3AQ99954 134 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 OR51J1Q9H342 316 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 ASIC5Q9NY37 505 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 GDF2Q9UK05 429 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 STAB1Q9NY15 2570 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 SLC35F4A4IF30 521 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 TVP23AA6NH52 213 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 EIF4E2O60573 245 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 UPK3AO75631 287 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 ZFPL1O95159 310 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 GPANK1O95872 356 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 IFNA17P01571 189 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 IFNW1P05000 195 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 NMBP08949 121 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 HLA-DMAP28067 261 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 NPBWR1P48145 328 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 UBE2KP61086 200 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 UBE2NP61088 152 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 DAG1Q14118 895 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 MRPS24Q96EL2 167 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF471Q9BX82 626 aaPredicted RBP6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 BARHL1Q9BZE3 327 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 SAP130Q9H0E3 1048 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 ADAM18Q9Y3Q7 739 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 ATP23Q9Y6H3 246 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 COL6A5A8TX70 2615 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 CPAMD8Q8IZJ3 1885 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 SERPINE3A8MV23 424 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 IMPA2O14732 288 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 SCGB2A1O75556 95 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 TNFSF13O75888 250 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 IFNGP01579 166 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 CXCL3P19876 107 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 PPIBP23284 216 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 AGTR1P30556 359 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 SDHAP31040 664 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 S100A11P31949 105 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 MC5RP33032 325 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 PTGER4P35408 488 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 NKX6-1P78426 367 aaPredicted RBP6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 FMODQ06828 376 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 STAC2Q6ZMT1 411 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 HIST2H3AQ71DI3 136 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 FAM24BQ8N5W8 94 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 CYB561A3Q8NBI2 242 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 ABCG5Q9H222 651 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 WDR76Q9H967 626 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 SEPSECSQ9HD40 501 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 KIF25Q9UIL4 384 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 SLC7A11Q9UPY5 501 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF835Q9Y2P0 537 aa6.9□□□□□ -1.3
LIMCH1-219ENST00000514096 A0A1W2PQL4 384 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 CST1P01037 141 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 C21orf33P30042 268 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 MRPL19P49406 292 aaKnown RBP6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 RAC3P60763 192 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF141Q15928 474 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 ATP6V1FQ16864 119 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 CEACAM16Q2WEN9 425 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 OR2A2Q6IF42 318 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 MISPQ8IVT2 679 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 OR13C2Q8NGS9 318 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 GNPDA2Q8TDQ7 276 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 TSSK2Q96PF2 358 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF649Q9BS31 505 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 ALKBH7Q9BT30 221 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 URM1Q9BTM9 101 aaKnown RBP6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 PRDM14Q9GZV8 571 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 GPR173Q9NS66 373 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 ACER3Q9NUN7 267 aa6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 CHD3Q12873 2000 aaKnown RBP6.9□□□□□ -1.31
LIMCH1-219ENST00000514096 LOC100130705A0A1B0GUX0 176 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 A8MVM7 634 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 H3BN98 237 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 OR2T1O43869 369 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 TBX19O60806 448 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 TFP02787 698 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 STAG3L2P0CL84 134 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 GPX2P18283 190 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 CEACAM3P40198 252 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 APOBEC1P41238 236 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 OR3A1P47881 315 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 ASCL1P50553 236 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF84P51523 738 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 PEG10Q86TG7 708 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 UEVLDQ8IX04 471 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 PACRGLQ8N7B6 248 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 OR6X1Q8NH79 312 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 NAA11Q9BSU3 229 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC25A32Q9H2D1 315 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF226Q9NYT6 803 aa6.89□□□□□ -1.31
LIMCH1-219ENST00000514096 MGAT4CQ9UBM8 478 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 114.3 ms