RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 GFRALQ6UXV0 394 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 DPPA3Q6W0C5 159 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 OR2G3Q8NGZ4 309 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 OR52N5Q8NH56 324 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 OR14L1PQ8NHC6 308 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 IL22RA2Q969J5 263 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM46BQ96A09 425 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 TSPAN32Q96QS1 320 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 LAT2Q9GZY6 243 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 HCSTQ9UBK5 93 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SLC5A6Q9Y289 635 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 A0A1W2PPE3 182 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 ATP1B3P54709 279 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SUMO3P55854 103 aaPredicted RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 MTCP1P56278 107 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 CTXN1P60606 82 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF616Q08AN1 781 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 EXOSC7Q15024 291 aaKnown RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF124Q15973 351 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SLC35E3Q7Z769 313 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF295-AS1Q8N0V1 137 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 TMEM178AQ8NBL3 297 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 OR52B4Q8NGK2 314 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 BAHD1Q8TBE0 780 aaPredicted RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 ZBTB8AQ96BR9 441 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF442Q9H7R0 627 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 HHLA2Q9UM44 414 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FADS1O60427 444 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SIX6O95475 246 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 LY86O95711 162 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 CGAP01215 116 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 NTSR1P30989 418 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 RPL35P42766 123 aaKnown RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 CAMLGP49069 296 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 RAB38P57729 211 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SIGLEC14Q08ET2 396 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 DHCR24Q15392 516 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 ALG10BQ5I7T1 473 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SLC25A26Q70HW3 274 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 CA13Q8N1Q1 262 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 ZMYND19Q96E35 227 aaPredicted RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 FAM71F1Q96KD3 344 aaPredicted RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 AP1S3Q96PC3 154 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SPOCK3Q9BQ16 436 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 AGMATQ9BSE5 352 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SMIM3Q9BZL3 60 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 ZDHHC8Q9ULC8 765 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 TRBV6-6A0A0A6YYG2 114 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SERPINA2P20848 420 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 ALG10Q5BKT4 473 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 CLEC18BQ6UXF7 455 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 MEX3BQ6ZN04 569 aaKnown RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 STEAP2Q8NFT2 490 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 PFN4Q8NHR9 129 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 HAS2Q92819 552 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 TXNIPQ9H3M7 391 aa4.72□□□□□ -1.65
SYNE1-220ENST00000471834 MRPS18BQ9Y676 258 aaKnown RBP4.72□□□□□ -1.65
SYNE1-220ENST00000471834 SERINC4A6NH21 518 aa4.71□□□□□ -1.65
SYNE1-220ENST00000471834 GGCTO75223 188 aaKnown RBP4.71□□□□□ -1.65
SYNE1-220ENST00000471834 SNRPEP62304 92 aaKnown RBP4.71□□□□□ -1.65
SYNE1-220ENST00000471834 ZP2Q05996 745 aa4.71□□□□□ -1.65
SYNE1-220ENST00000471834 NSDHLQ15738 373 aa4.71□□□□□ -1.65
SYNE1-220ENST00000471834 RNASE10Q5GAN6 216 aaKnown RBP4.71□□□□□ -1.65
SYNE1-220ENST00000471834 C1orf140Q5VVS0 124 aa4.71□□□□□ -1.65
SYNE1-220ENST00000471834 UEVLDQ8IX04 471 aa4.71□□□□□ -1.65
SYNE1-220ENST00000471834 VDAC3Q9Y277 283 aa4.71□□□□□ -1.65
SYNE1-220ENST00000471834 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 UMAD1C9J7I0 102 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 F5H5K5 113 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 K7ESM1 405 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 SYT7O43581 403 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 OR5AC1P0C628 307 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 P0C879 139 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 FUT1P19526 365 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 P2RY2P41231 377 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 ERVK-25P63136 954 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 CLN3Q13286 438 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 C9orf135Q5VTT2 229 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM144Q7Z5S9 345 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 SLAMF9Q96A28 289 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 FGGYQ96C11 551 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 ZC3H12DA2A288 527 aaKnown RBP4.71□□□□□ -1.66
SYNE1-220ENST00000471834 A6NLC8 198 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 A8MWP6 167 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 IFNA5P01569 189 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 TTRP02766 147 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 NR2C1P13056 603 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 APLNRP35414 380 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 Q6ZSR6 202 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 CD163Q86VB7 1156 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 GTPBP8Q8N3Z3 284 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-220ENST00000471834 NMNAT3Q96T66 252 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 PHB2Q99623 299 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 C20orf144Q9BQM9 153 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 S1PR5Q9H228 398 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 RPS10P5Q9NQ39 176 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 VAX2Q9UIW0 290 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 VSTM2BA6NLU5 285 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF891A8MT65 544 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-220ENST00000471834 C17orf105B2RV13 164 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms