RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 PSMB11A5LHX3 300 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 LYRM9A8MSI8 78 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 HIDE1A8MVS5 230 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 SRSF10O75494 262 aaKnown RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 KLF8O95600 359 aaPredicted RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 CLIC3O95833 236 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 C8GP07360 202 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 CSF3P09919 207 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 CISD3P0C7P0 127 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 CHTF8P0CG12 524 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 MPC1LP0DKB6 136 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 ZNF30P17039 623 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 HOXA9P31269 272 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 RPL5P46777 297 aaKnown RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 SH3BGRP55822 239 aaPredicted RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 HMGCS1Q01581 520 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 DOC2AQ14183 400 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 KIAA0087Q14695 138 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 ZNF239Q16600 458 aaKnown RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 LIN52Q52LA3 116 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 LY6G6FQ5SQ64 297 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 FHL5Q5TD97 284 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 TMEM215Q68D42 235 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 ASCL5Q7RTU5 278 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 RALGPS2Q86X27 583 aaPredicted RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 TCAIMQ8N3R3 496 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 ZADH2Q8N4Q0 377 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 PACRGLQ8N7B6 248 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 CCDC54Q8NEL0 328 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 OR8J3Q8NGG0 315 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 OR2G3Q8NGZ4 309 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 LINC01006Q8NI28 216 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 ZNF502Q8TBZ5 544 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 MCOLN3Q8TDD5 553 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 GPX8Q8TED1 209 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 TMEM54Q969K7 222 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 PPWD1Q96BP3 646 aaKnown RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 OTUB2Q96DC9 234 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 DGCR14Q96DF8 476 aaKnown RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 CENPNQ96H22 339 aaPredicted RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 CNBD2Q96M20 576 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 PRRC1Q96M27 445 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 JSRP1Q96MG2 331 aaPredicted RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 TSC22D3Q99576 134 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 CGREF1Q99674 301 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 C9orf16Q9BUW7 83 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 OSBPL11Q9BXB4 747 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 YIPF3Q9GZM5 350 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 RPF2Q9H7B2 306 aaKnown RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 LRTM1Q9HBL6 345 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 C8orf4Q9NR00 106 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 AGPAT4Q9NRZ5 378 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 C1orf109Q9NX04 203 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 CCDC59Q9P031 241 aaKnown RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 NYNRINQ9P2P1 1898 aaKnown RBP3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 CLCF1Q9UBD9 225 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 RNF11Q9Y3C5 154 aa3.4□□□□□ -1.87
HMGB3P18-201ENST00000406327 COL4A6Q14031 1691 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 LRRK1Q38SD2 2015 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 PTPRDP23468 1912 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 KCNE1BA0A087WTH5 132 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 A0A0G2JN53 185 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 SMIM31A0A1B0GVY4 71 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 XKRYO14609 159 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 SLC9A3R1O14745 358 aaPredicted RBP3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 ACOX3O15254 700 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 EMC8O43402 210 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 TNFAIP8O95379 198 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 PDYNP01213 254 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 IGKV3-15P01624 115 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 IL6P05231 212 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 GIPP09681 153 aaPredicted RBP3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 PRPS2P11908 318 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 PSMC3P17980 439 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 GGT1P19440 569 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 KLK2P20151 261 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 BCKDHBP21953 392 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 DCKP27707 260 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 RORCP51449 518 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 CCR8P51685 355 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 AP1S2P56377 157 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 CLDN8P56748 225 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 OR4D2P58180 307 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 ACTA2P62736 377 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 RPL38P63173 70 aaKnown RBP3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 ACTG2P63267 376 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 ACTC1P68032 377 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 ACTA1P68133 377 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 SELENBP1Q13228 472 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 IMPG1Q17R60 797 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 OTPQ5XKR4 325 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 STUMQ69YW2 141 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 GLYATQ6IB77 296 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 SPESP1Q6UW49 350 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 MBOAT1Q6ZNC8 495 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 RIMKLAQ8IXN7 391 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 CEND1Q8N111 149 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 CBR4Q8N4T8 237 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 TRAM1L1Q8N609 369 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 OR10R2Q8NGX6 335 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms