RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PIK3C2AO00443 1686 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 NWD2Q9ULI1 1742 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 LRRC37A3O60309 1634 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 A0A087WX48 190 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.61□□□□□ -1.83
USH2A-202ENST00000366942 OOSP1A8MZH6 123 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 OGG1O15527 345 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 PRKYO43930 277 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 ZNF354AO60765 605 aaPredicted RBP3.61□□□□□ -1.83
USH2A-202ENST00000366942 TNFRSF6BO95407 300 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 STSP08842 583 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 FAM157CP0CG43 387 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 ETV4P43268 484 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 Q6ZN92 141 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 GCSAMQ8N6F7 178 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 TCTEX1D1Q8N7M0 179 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 C15orf54Q8N8G6 183 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 LHX4Q969G2 390 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 YIPF6Q96EC8 236 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 REEP6Q96HR9 211 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 PACRGQ96M98 296 aaPredicted RBP3.61□□□□□ -1.83
USH2A-202ENST00000366942 PHOX2BQ99453 314 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 TM2D2Q9BX73 214 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 SAR1AQ9NR31 198 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 DKK4Q9UBT3 224 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 TMEM56-RWDD3S4R434 201 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 TMEM212A6NML5 194 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 A8MT66 165 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 H0YIV9 168 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 RGS13O14921 159 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 CD160O95971 181 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 TRGV3P03979 118 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 AGTR1P30556 359 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 CCR2P41597 374 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 CCL18P55774 89 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 OR1Q1Q15612 314 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 TUSC1Q2TAM9 212 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 TTC32Q5I0X7 151 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 OGFRL1Q5TC84 451 aaPredicted RBP3.61□□□□□ -1.83
USH2A-202ENST00000366942 LCN10Q6JVE6 187 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 FAM219AQ8IW50 185 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 NECAP1Q8NC96 275 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 SLC37A3Q8NCC5 494 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 OR4K5Q8NGD3 323 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 OR4B1Q8NGF8 309 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 SLC7A13Q8TCU3 470 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 C4orf45Q96LM5 186 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 YIPF3Q9GZM5 350 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 GPR55Q9Y2T6 319 aaPredicted RBP3.61□□□□□ -1.83
USH2A-202ENST00000366942 UBR1Q8IWV7 1749 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 ANKRD12Q6UB98 2062 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 ACOD1A6NK06 481 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 AMBPP02760 352 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 OR8U9P0C7N5 309 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 PRSS3P35030 304 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 UCP2P55851 309 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 RUNX1Q01196 453 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 FZD5Q13467 585 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 SPRED3Q2MJR0 410 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 PAPPA-AS1Q5QFB9 102 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 MRPL2Q5T653 305 aaKnown RBP3.61□□□□□ -1.83
USH2A-202ENST00000366942 OR2T2Q6IF00 324 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 TMED4Q7Z7H5 227 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 LURAP1LQ8IV03 231 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 OR8H3Q8N146 312 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 STXBP6Q8NFX7 210 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 OR9G4Q8NGQ1 327 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 OR1L4Q8NGR5 311 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 OR9G1Q8NH87 305 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 MUL1Q969V5 352 aa3.61□□□□□ -1.83
USH2A-202ENST00000366942 QRSL1Q9H0R6 528 aaKnown RBP3.61□□□□□ -1.83
USH2A-202ENST00000366942 AQP12BA6NM10 295 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 CISD3P0C7P0 127 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 MUC1P15941 1255 aaPredicted RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 TFPI2P48307 235 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 SULT1A2P50226 295 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 B4GALNT1Q00973 533 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 FLI1Q01543 452 aaPredicted RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 AKIRIN2Q53H80 203 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 SLC35D3Q5M8T2 416 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 MDP1Q86V88 176 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 AQP12AQ8IXF9 295 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 TOMM5Q8N4H5 51 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 OR8J3Q8NGG0 315 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 DGCR14Q96DF8 476 aaKnown RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 CXorf58Q96LI9 332 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 PRRT1Q99946 306 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 GATA5Q9BWX5 397 aaPredicted RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 NKX6-2Q9C056 277 aaPredicted RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 MBNL3Q9NUK0 354 aaKnown RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 CLEC5AQ9NY25 188 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 KLK11Q9UBX7 282 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ZNF222Q9UK12 451 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 POMT1Q9Y6A1 747 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ZNF99A8MXY4 864 aaPredicted RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 E7ESA3 106 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 SDCBPO00560 298 aaPredicted RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 CTSBP07858 339 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 MSMBP08118 114 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 HLA-GP17693 338 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms