RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 ZNF443Q9Y2A4 671 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SLC17A4Q9Y2C5 497 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF816-ZNF321PA0A0X1KG74 233 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 F11P03951 625 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 DUSP28Q4G0W2 176 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF813Q6ZN06 617 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 RNF165Q6ZSG1 346 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF765Q7L2R6 523 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 PNPLA1Q8N8W4 532 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM30AQ9NV96 361 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 BCL9O00512 1426 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 OOEPA6NGQ2 149 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SOD1P00441 154 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 CDKN1CP49918 316 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 MEF2BQ02080 365 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 C9orf152Q5JTZ5 239 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 GPRIN1Q7Z2K8 1008 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 ZMYND19Q96E35 227 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF583Q96ND8 569 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 MSRAQ9UJ68 235 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SLC22A13Q9Y226 551 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 RNF225M0QZC1 329 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 CDX4O14627 284 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 ZIC2O95409 532 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 FTH1P19P0C7X4 201 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 VDAC1P21796 283 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 HRH1P35367 487 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 GAGE1Q13065 139 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM107Q6UX40 140 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 LINC00596Q86U02 117 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 ZFP41Q8N8Y5 198 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 OR52I2Q8NH67 350 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 OR2T6Q8NHC8 308 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 RXFP4Q8TDU9 374 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 PTPN18Q99952 460 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 TAC3Q9UHF0 121 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 MBD1Q9UIS9 605 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SAP18O00422 153 aaKnown RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 IL4P05112 153 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 PIK3IP1Q96FE7 263 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SEC22AQ96IW7 307 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SUSD3Q96L08 255 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 NXF5Q9H1B4 397 aaKnown RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 MAP1LC3AQ9H492 121 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 NAA60Q9H7X0 242 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 OR51B2Q9Y5P1 312 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 PTPRSQ13332 1948 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 M0R3E3 92 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 NKX1-1Q15270 411 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 RNASEKQ6P5S7 137 aaKnown RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM182Q6ZP80 229 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ZCCHC10Q8TBK6 192 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 OR2W1Q9Y3N9 320 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 PPP6CO00743 305 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ADAP1O75689 374 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 PRICKLE4Q2TBC4 344 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 HLA-DRB5Q30154 266 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 Q5PR19 223 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 OR1P1Q8NH06 330 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 RND1Q92730 232 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM56Q96MV1 263 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ELOVL1Q9BW60 279 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF385DQ9H6B1 395 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 MBNL1Q9NR56 388 aaKnown RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 CA10Q9NS85 328 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 GIMAP2Q9UG22 337 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ARPC3O15145 178 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 SOD2P04179 222 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 TNFSF10P50591 281 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 TARBP2Q15633 366 aaKnown RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 SMIM21Q3B7S5 101 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 PAQR6Q6TCH4 344 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 TCF24Q7RTU0 167 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ST6GAL2Q96JF0 529 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ODAMA1E959 279 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 MANSC4A6NHS7 340 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 DAPP51397 102 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 EVX2Q03828 476 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 MICBQ29980 383 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM201Q5SNT2 666 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 MORN1Q5T089 497 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 YRDCQ86U90 279 aaKnown RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ZBTB34Q8NCN2 500 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 PWWP2AQ96N64 755 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ZIC5Q96T25 663 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 GSN-AS1Q9NRJ2 163 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 CLN8Q9UBY8 286 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 SMIM28A0A1B0GU29 152 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 TLCD2A6NGC4 264 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 YJEFN3A6XGL0 299 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ALG1L2C9J202 215 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 C11orf98E9PRG8 122 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 CFDP00746 253 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 TEAD1P28347 426 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 C17orf67Q0P5P2 114 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 PRDX4Q13162 271 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 PRTGQ2VWP7 1150 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 CLEC20AQ6ZU45 233 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 KLHDC8AQ8IYD2 350 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 PUSL1Q8N0Z8 303 aaKnown RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms