RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-215	ENST00000597649	ABHD6	Q9BV23	337 aa		13.6	□□□□□ -0.23
SHKBP1-215	ENST00000597649	ANKRD60	Q9BZ19	345 aa		13.6	□□□□□ -0.23
SHKBP1-215	ENST00000597649	ADGRL4	Q9HBW9	690 aa		13.6	□□□□□ -0.23
SHKBP1-215	ENST00000597649	ACOXL	Q9NUZ1	547 aa		13.6	□□□□□ -0.23
SHKBP1-215	ENST00000597649	IGHV1-69D	A0A0B4J2H0	117 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649		A0A0U1RQK1	487 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	IRGM	A1A4Y4	181 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	IGHV1-69	P01742	117 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	SLC15A1	P46059	708 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	IER3	P46695	156 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	HCCS	P53701	268 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	SMN1	Q16637	294 aa	Known RBP	13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	KLHL22	Q53GT1	634 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	PRAMEF6	Q5VXH4	476 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	KCTD18	Q6PI47	426 aa	Predicted RBP	13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	COLCA1	Q6ZS62	124 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649		Q6ZSV7	163 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	OR10H4	Q8NGA5	316 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	ASB17	Q8WXJ9	295 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	MAP6	Q96JE9	813 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	COQ7	Q99807	217 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	ATF6B	Q99941	703 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	COPS4	Q9BT78	406 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	SMURF1	Q9HCE7	757 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	UFSP2	Q9NUQ7	469 aa		13.59	□□□□□ -0.23
SHKBP1-215	ENST00000597649	ZNF878	C9JN71	531 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	FADS2	O95864	444 aa	Known RBP	13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	H2BFM	P0C1H6	154 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	OR2T7	P0C7T2	308 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	PSKH1	P11801	424 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	CSNK2B	P67870	215 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	KRTAP27-1	Q3LI81	207 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	SFRP4	Q6FHJ7	346 aa	Predicted RBP	13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	KRT77	Q7Z794	578 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	PIP4P2	Q8N4L2	257 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	BPIFB6	Q8NFQ5	453 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	OR2T27	Q8NH04	317 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	LHX4	Q969G2	390 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	SPTSSA	Q969W0	71 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	TECTB	Q96PL2	329 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	TBX5	Q99593	518 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	SIRPD	Q9H106	197 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	ATPIF1	Q9UII2	106 aa		13.58	□□□□□ -0.24
SHKBP1-215	ENST00000597649	DAPL1	A0PJW8	107 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649		F5H5K5	113 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649		G3V4G9	280 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	LIPF	P07098	398 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	IRF2	P14316	349 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	ALOX5AP	P20292	161 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	HSD11B1	P28845	292 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	CD200	P41217	278 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	NPY4R	P50391	375 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	TPTE	P56180	551 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	CXCR4	P61073	352 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	GRB2	P62993	217 aa	Known RBP	13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	ACTC1	P68032	377 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	ACTA1	P68133	377 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	RAB40B	Q12829	278 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	C6orf141	Q5SZD1	244 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	CD276	Q5ZPR3	534 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	NAA40	Q86UY6	237 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	LDLRAD3	Q86YD5	345 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	PDZD9	Q8IXQ8	264 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	CELF2-AS1	Q8N7Q2	184 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	FBLIM1	Q8WUP2	373 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	LGALS12	Q96DT0	336 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	MYCBP	Q99417	103 aa	Predicted RBP	13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	C16orf95	Q9H693	158 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	SCN3B	Q9NY72	215 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	IKZF2	Q9UKS7	526 aa		13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	EXOG	Q9Y2C4	368 aa	Known RBP	13.57	□□□□□ -0.24
SHKBP1-215	ENST00000597649	C3orf80	F5H4A9	247 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	DENR	O43583	198 aa	Known RBP	13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	PRB2	P02812	416 aa	Predicted RBP	13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	ARF6	P62330	175 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	GK2	Q14410	553 aa	Predicted RBP	13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	BEAN1	Q3B7T3	259 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	ZNF322	Q6U7Q0	402 aa	Predicted RBP	13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	ACBD7	Q8N6N7	88 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	OR11L1	Q8NGX0	322 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	RNF133	Q8WVZ7	376 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	ERGIC1	Q969X5	290 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	MRPL48	Q96GC5	212 aa	Known RBP	13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	KCNJ15	Q99712	375 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	MRO	Q9BYG7	248 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	TTTY10	Q9BZA0	68 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	PNRC2	Q9NPJ4	139 aa	Known RBP	13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	ERVK-18	Q9QC07	812 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	COPS3	Q9UNS2	423 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649	KLHDC2	Q9Y2U9	406 aa		13.56	□□□□□ -0.24
SHKBP1-215	ENST00000597649		A0A1W2PQL4	384 aa	Predicted RBP	13.55	□□□□□ -0.24
SHKBP1-215	ENST00000597649	EFCAB10	A6NFE3	127 aa		13.55	□□□□□ -0.24
SHKBP1-215	ENST00000597649	LGALS8	O00214	317 aa		13.55	□□□□□ -0.24
SHKBP1-215	ENST00000597649	ADAM20	O43506	726 aa		13.55	□□□□□ -0.24
SHKBP1-215	ENST00000597649	APOC1	P02654	83 aa		13.55	□□□□□ -0.24
SHKBP1-215	ENST00000597649	MED21	Q13503	144 aa		13.55	□□□□□ -0.24
SHKBP1-215	ENST00000597649	METTL11B	Q5VVY1	283 aa		13.55	□□□□□ -0.24
SHKBP1-215	ENST00000597649	STX19	Q8N4C7	294 aa		13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms