RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 FER1L6-AS2Q96M78 137 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 FXYD6Q9H0Q3 95 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 KMT2EQ8IZD2 1858 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 ASPMQ8IZT6 3477 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 L7N2F9 121 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 M0R233 179 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 SYNGR4O95473 234 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 AKR1C4P17516 323 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 PCBD1P61457 104 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 ZNF92Q03936 586 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 PPP1R1AQ13522 171 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 FAM89BQ8N5H3 189 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 ADAD2Q8NCV1 583 aaKnown RBP14.21□□□□□ -0.13
COL4A1-204ENST00000543140 STEAP2Q8NFT2 490 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 TMEM45BQ96B21 275 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 FN3KRPQ9HA64 309 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 NOP16Q9Y3C1 178 aaKnown RBP14.21□□□□□ -0.13
COL4A1-204ENST00000543140 IGKV3D-15A0A087WSY6 115 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 FARS2O95363 451 aaKnown RBP14.2□□□□□ -0.14
COL4A1-204ENST00000543140 GABRR1P24046 479 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 ALDH3B1P43353 468 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 PPIAP62937 165 aaKnown RBP14.2□□□□□ -0.14
COL4A1-204ENST00000543140 EXOSC2Q13868 293 aaKnown RBP14.2□□□□□ -0.14
COL4A1-204ENST00000543140 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.2□□□□□ -0.14
COL4A1-204ENST00000543140 MARCH1Q8TCQ1 289 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 C10orf35Q96D05 121 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 GHRLQ9UBU3 117 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 IGKV1-27A0A075B6S5 117 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 CCSO14618 274 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 MMP7P09237 267 aaPredicted RBP14.2□□□□□ -0.14
COL4A1-204ENST00000543140 CCNOP22674 350 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 CD34P28906 385 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 SORDQ00796 357 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 OPCMLQ14982 345 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 LY6G6FQ5SQ64 297 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 SUMF1Q8NBK3 374 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 DEFB124Q8NES8 71 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 IRF2BPLQ9H1B7 796 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 DEFB127Q9H1M4 99 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 MCTS1Q9ULC4 181 aaKnown RBP14.2□□□□□ -0.14
COL4A1-204ENST00000543140 LIPGQ9Y5X9 500 aa14.2□□□□□ -0.14
COL4A1-204ENST00000543140 SPAARA0A1B0GVQ0 90 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 MCRIP1C9JLW8 97 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 CCL2P13500 99 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 VAMP1P23763 118 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 SEC61A1P61619 476 aaKnown RBP14.19□□□□□ -0.14
COL4A1-204ENST00000543140 DHODHQ02127 395 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 FAM189A2Q15884 450 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 KRTAP27-1Q3LI81 207 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 C6orf201Q7Z4U5 140 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 SLC25A42Q86VD7 318 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 MDS2Q8NDY4 140 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 CASTOR1Q8WTX7 329 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 IP6K3Q96PC2 410 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 PECRQ9BY49 303 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 NME2P1O60361 137 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 HTR3BO95264 441 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 HLA-HP01893 362 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 NME2P22392 152 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 MPZP25189 248 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 PNLIPRP3Q17RR3 467 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 NKAPLQ5M9Q1 402 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 TMPRSS7Q7RTY8 843 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 MYOZ1Q9NP98 299 aaPredicted RBP14.19□□□□□ -0.14
COL4A1-204ENST00000543140 PARD6AQ9NPB6 346 aa14.19□□□□□ -0.14
COL4A1-204ENST00000543140 KLF13Q9Y2Y9 288 aaPredicted RBP14.19□□□□□ -0.14
COL4A1-204ENST00000543140 ZNF587BE7ETH6 402 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 KLRC4-KLRK1H3BQV0 150 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 SDCBPO00560 298 aaPredicted RBP14.18□□□□□ -0.14
COL4A1-204ENST00000543140 GALR2O43603 387 aaPredicted RBP14.18□□□□□ -0.14
COL4A1-204ENST00000543140 NRASP01111 189 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 AMY2BP19961 511 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 TBPP20226 339 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 NPY4RP50391 375 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 IL13RA1P78552 427 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 FAM3AP98173 230 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 SRSF6Q13247 344 aaKnown RBP14.18□□□□□ -0.14
COL4A1-204ENST00000543140 VASH2Q86V25 355 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 ST8SIA4Q92187 359 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 OCSTAMPQ9BR26 566 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 PARPBPQ9NWS1 579 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 B3GNT2Q9NY97 397 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 ZNF581Q9P0T4 197 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 FRYQ5TBA9 3013 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 FOXI3A8MTJ6 420 aaPredicted RBP14.18□□□□□ -0.14
COL4A1-204ENST00000543140 EDN3P14138 238 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 ZBTB25P24278 435 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 RSU1Q15404 277 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 MPPED2Q15777 294 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 LYG2Q86SG7 212 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 ZDHHC22Q8N966 263 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 CCDC54Q8NEL0 328 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 SEC22AQ96IW7 307 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 TMPRSS13Q9BYE2 586 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 DMXL1Q9Y485 3027 aa14.18□□□□□ -0.14
COL4A1-204ENST00000543140 C9orf170A2RU37 121 aa14.17□□□□□ -0.14
COL4A1-204ENST00000543140 DHRS7CA6NNS2 312 aa14.17□□□□□ -0.14
COL4A1-204ENST00000543140 IFNA7P01567 189 aa14.17□□□□□ -0.14
COL4A1-204ENST00000543140 PPP3CBP16298 524 aa14.17□□□□□ -0.14
COL4A1-204ENST00000543140 NAT1P18440 290 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms