RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ZNF705FA8MVS1 300 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 M0QZ24 198 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 AP4M1O00189 453 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 RAB29O14966 203 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 LYRM1O43325 122 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 KLF4O43474 513 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 IFNA2P01563 188 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 HLA-DQA2P01906 255 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 UBCP0CG48 685 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF705DP0CH99 300 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF705BP0CI00 300 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 ARL3P36405 182 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 WNT5AP41221 380 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF239Q16600 458 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 TSPO2Q5TGU0 170 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 NSUN5P2Q63ZY6 315 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 OR5L1Q8NGL2 311 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 PPP1R35Q8TAP8 253 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 MUCL1Q96DR8 90 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 PGAM5Q96HS1 289 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 HSH2DQ96JZ2 352 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 DMRTA2Q96SC8 542 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 TTTY10Q9BZA0 68 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 LAT2Q9GZY6 243 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 PDP1Q9P0J1 537 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 POMT1Q9Y6A1 747 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 CCSO14618 274 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 NDUFS7O75251 213 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 SOX14O95416 240 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 ARAFP10398 606 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 B4GALT1P15291 398 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 AQP2P41181 271 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 POLR2HP52434 150 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 SPIBQ01892 262 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 PLAURQ03405 335 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 PRKCDQ05655 676 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 LBHQ53QV2 105 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 TOMM40LQ969M1 308 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 SLC41A3Q96GZ6 507 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 RSPO3Q9BXY4 272 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 POTEKPQ9BYX7 375 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 OR14J1Q9UGF5 321 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 DUSP13Q9UII6 198 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 POLR1DQ9Y2S0 133 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 A6NLC8 198 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 PPP1R2P9O14990 202 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 ARPC1BO15143 372 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 HLA-HP01893 362 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 KDELR2P33947 212 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 RPS19P39019 145 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 RPS27P42677 84 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 BIDP55957 195 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 EEFSECP57772 596 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 ACTA2P62736 377 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 ACTG2P63267 376 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 ACTC1P68032 377 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 ACTA1P68133 377 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 CDNFQ49AH0 187 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 WBP2NLQ6ICG8 309 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 SHISA2Q6UWI4 295 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 OVCH2Q7RTZ1 564 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 OR5K1Q8NHB7 308 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 SORCS2Q96PQ0 1159 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 SLC7A10Q9NS82 523 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 C20orf141Q9NUB4 165 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 ASB6Q9NWX5 421 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 CHST2Q9Y4C5 530 aa6.92□□□□□ -1.3
LIMCH1-219ENST00000514096 NUP210LQ5VU65 1888 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 FXYD1O00168 92 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 ITGB1BP1O14713 200 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 JUNBP17275 347 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 SPI1P17947 270 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 CDAP32320 146 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 LUMP51884 338 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 CSNK2A1P68400 391 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 SPOCK1Q08629 439 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 DMRTC1Q5HYR2 192 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 ASPHD2Q6ICH7 369 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 ERASQ7Z444 233 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 CCDC190Q86UF4 302 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 DND1Q8IYX4 353 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 FADS6Q8N9I5 356 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 GPR32P1Q8NGA4 272 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 OR5D18Q8NGL1 313 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 WFDC12Q8WWY7 111 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 ZBTB8AQ96BR9 441 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF583Q96ND8 569 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 HS3ST6Q96QI5 342 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 DIRC2Q96SL1 478 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 ENKD1Q9H0I2 346 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 ZNF346Q9UL40 294 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 SPIN1Q9Y657 262 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 GJE1A6NN92 205 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 FAM157BP0CG42 384 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 PNMTP11086 282 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 GLRA1P23415 457 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 NTF4P34130 210 aa6.91□□□□□ -1.3
LIMCH1-219ENST00000514096 SELENOVP59797 346 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 209.2 ms