RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 MAB21L1Q13394 359 aa16.41■□□□□ 0.22
USP39-202ENST00000409025 GK2Q14410 553 aaPredicted RBP16.41■□□□□ 0.22
USP39-202ENST00000409025 PNLIPRP3Q17RR3 467 aa16.41■□□□□ 0.22
USP39-202ENST00000409025 ACSF3Q4G176 576 aaPredicted RBP16.41■□□□□ 0.22
USP39-202ENST00000409025 PLAC9Q5JTB6 97 aa16.41■□□□□ 0.22
USP39-202ENST00000409025 MDP1Q86V88 176 aa16.41■□□□□ 0.22
USP39-202ENST00000409025 BEST4Q8NFU0 473 aa16.41■□□□□ 0.22
USP39-202ENST00000409025 TM2D1Q9BX74 207 aa16.41■□□□□ 0.22
USP39-202ENST00000409025 MYO7BQ6PIF6 2116 aa16.4■□□□□ 0.22
USP39-202ENST00000409025 IGKV1-27A0A075B6S5 117 aa16.4■□□□□ 0.22
USP39-202ENST00000409025 CNOT4O95628 575 aaKnown RBP16.4■□□□□ 0.22
USP39-202ENST00000409025 IGHV1-2P23083 117 aa16.4■□□□□ 0.22
USP39-202ENST00000409025 MECP2P51608 486 aaKnown RBP16.4■□□□□ 0.22
USP39-202ENST00000409025 TMEM50BP56557 158 aa16.4■□□□□ 0.22
USP39-202ENST00000409025 ZNF585AQ6P3V2 769 aa16.4■□□□□ 0.22
USP39-202ENST00000409025 CCDC36Q8IYA8 594 aa16.4■□□□□ 0.22
USP39-202ENST00000409025 RBMXL3Q8N7X1 1067 aaKnown RBP16.4■□□□□ 0.22
USP39-202ENST00000409025 SCNM1Q9BWG6 230 aa16.4■□□□□ 0.22
USP39-202ENST00000409025 OPA3Q9H6K4 179 aa16.4■□□□□ 0.22
USP39-202ENST00000409025 M0QYG6 137 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 SSNA1O43805 119 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 AMY2AP04746 511 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 CPT2P23786 658 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 MEF2DQ14814 521 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 RSU1Q15404 277 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 RPUSD3Q6P087 351 aaKnown RBP16.39■□□□□ 0.21
USP39-202ENST00000409025 Q6ZT83 130 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 OR56B2PQ8NGI1 322 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 OR6K3Q8NGY3 331 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 ARHGAP5-AS1Q96IT6 56 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 TINAGL1Q9GZM7 467 aaPredicted RBP16.39■□□□□ 0.21
USP39-202ENST00000409025 NPDC1Q9NQX5 325 aaPredicted RBP16.39■□□□□ 0.21
USP39-202ENST00000409025 PTTG3PQ9NZH4 202 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 STARD10Q9Y365 291 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 ZNF850A8MQ14 1090 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 MKRN2OSH3BPM6 223 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 PYCARD-AS1I3L0S3 204 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 SSX5O60225 188 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 RAD51DO75771 328 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 CSTBP04080 98 aaKnown RBP16.39■□□□□ 0.21
USP39-202ENST00000409025 IL5P05113 134 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 RAD52P43351 418 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 KIR2DL2P43627 348 aaPredicted RBP16.39■□□□□ 0.21
USP39-202ENST00000409025 UBE2NP61088 152 aaKnown RBP16.39■□□□□ 0.21
USP39-202ENST00000409025 SF3B4Q15427 424 aaKnown RBP eCLIP16.39■□□□□ 0.213e-14■■■■■ 33.9
USP39-202ENST00000409025 NSUN5P2Q63ZY6 315 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 GLDNQ6ZMI3 551 aaPredicted RBP16.39■□□□□ 0.21
USP39-202ENST00000409025 RTN4RL2Q86UN3 420 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 NOXA1Q86UR1 476 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 SLC30A7Q8NEW0 376 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 OR4S1Q8NGB4 309 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 MS4A3Q96HJ5 214 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 MED30Q96HR3 178 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 GPN1Q9HCN4 374 aaPredicted RBP16.39■□□□□ 0.21
USP39-202ENST00000409025 SCP2D1Q9UJQ7 156 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 KCNK7Q9Y2U2 307 aa16.39■□□□□ 0.21
USP39-202ENST00000409025 DISC1C4P0D8 188 aa16.38■□□□□ 0.21
USP39-202ENST00000409025 MFNGO00587 321 aa16.38■□□□□ 0.21
USP39-202ENST00000409025 SPRY1O43609 319 aaPredicted RBP16.38■□□□□ 0.21
USP39-202ENST00000409025 GFRA3O60609 400 aa16.38■□□□□ 0.21
USP39-202ENST00000409025 ZNF780AO75290 641 aaPredicted RBP16.38■□□□□ 0.21
USP39-202ENST00000409025 HTR3BO95264 441 aa16.38■□□□□ 0.21
USP39-202ENST00000409025 NGFP01138 241 aa16.38■□□□□ 0.21
USP39-202ENST00000409025 CRYABP02511 175 aaKnown RBP16.38■□□□□ 0.21
USP39-202ENST00000409025 HPXP02790 462 aa16.38■□□□□ 0.21
USP39-202ENST00000409025 ANXA7P20073 488 aaKnown RBP16.38■□□□□ 0.21
USP39-202ENST00000409025 BLVRBP30043 206 aaPredicted RBP16.38■□□□□ 0.21
USP39-202ENST00000409025 ARL6IP1Q15041 203 aa16.38■□□□□ 0.21
USP39-202ENST00000409025 RNASE10Q5GAN6 216 aaKnown RBP16.38■□□□□ 0.21
USP39-202ENST00000409025 ASCL4Q6XD76 172 aa16.38■□□□□ 0.21
USP39-202ENST00000409025 BPIFB2Q8N4F0 458 aa16.38■□□□□ 0.21
USP39-202ENST00000409025 GVQW1Q8N7I0 195 aa16.38■□□□□ 0.21
USP39-202ENST00000409025 CSNK2A3Q8NEV1 391 aa16.38■□□□□ 0.21
USP39-202ENST00000409025 ZNF486Q96H40 463 aaPredicted RBP16.38■□□□□ 0.21
USP39-202ENST00000409025 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.38■□□□□ 0.21
USP39-202ENST00000409025 FOXI3A8MTJ6 420 aaPredicted RBP16.37■□□□□ 0.21
USP39-202ENST00000409025 K7EM74 188 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 ANGPTL7O43827 346 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 LYZL6O75951 148 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 PLATP00750 562 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 RLN1P04808 185 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 HLXQ14774 488 aaPredicted RBP16.37■□□□□ 0.21
USP39-202ENST00000409025 TBC1D28Q2M2D7 210 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 OR11H7Q8NGC8 314 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 OR5L1Q8NGL2 311 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 ZNF75AQ96N20 296 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 PAPOLGQ9BWT3 736 aaKnown RBP16.37■□□□□ 0.21
USP39-202ENST00000409025 ZNF222Q9UK12 451 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 LHX6Q9UPM6 363 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 PLEKHA6Q9Y2H5 1048 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 SSUH2Q9Y2M2 353 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 ZNF735P0CB33 412 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 MRPS15P82914 257 aaKnown RBP16.37■□□□□ 0.21
USP39-202ENST00000409025 ARFRP1Q13795 201 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 GABRA6Q16445 453 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 VWA1Q6PCB0 445 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 IDO2Q6ZQW0 420 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 FTMTQ8N4E7 242 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 Q96M66 194 aa16.37■□□□□ 0.21
USP39-202ENST00000409025 SLC25A21Q9BQT8 299 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 177.3 ms