RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 PLXDC1Q8IUK5 500 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 OR2Y1Q8NGV0 311 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 GUCD1Q96NT3 240 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 TIMP4Q99727 224 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 PRR14Q9BWN1 585 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 CHODLQ9H9P2 273 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 IL21Q9HBE4 155 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 A0A1W2PQH9 124 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 FMODQ06828 376 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 FAHD1Q6P587 224 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 CD300LDQ6UXZ3 194 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 ADAMTS17Q8TE56 1095 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 OR4C12Q96R67 309 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 EPHX3Q9H6B9 360 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 RHBDD3Q9Y3P4 386 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 CXorf1O96002 111 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 MELTFP08582 738 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 SP2Q02086 613 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 FBXL22Q6P050 247 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 DNM1P46Q6ZS02 220 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 CA13Q8N1Q1 262 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 PRRX2Q99811 253 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 ANAPC13Q9BS18 74 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 PRTFDC1Q9NRG1 225 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 MRPL15Q9P015 296 aaKnown RBP4.4□□□□□ -1.71
CSMD3-201ENST00000297405 FAM198AQ9UFP1 575 aa4.4□□□□□ -1.71
CSMD3-201ENST00000297405 ZC3H12DA2A288 527 aaKnown RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SMIM30A4D0T7 59 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 OR4C45A6NMZ5 311 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM250H0YL14 139 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 TSPAN13O95857 204 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 HOXC13P31276 330 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 HYAL2Q12891 473 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 CTU1Q7Z7A3 348 aaKnown RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 TGIF2LYQ8IUE0 185 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 FAM24BQ8N5W8 94 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 C19orf47Q8N9M1 422 aaKnown RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 C12orf42Q96LP6 360 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 OR2D2Q9H210 308 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 FKRPQ9H9S5 495 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 A0A0G2JMZ2 1700 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 LRRC37A2A6NM11 1700 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 LRRC37AA6NMS7 1700 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 GABRA1P14867 456 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 FUT1P19526 365 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 OR1D4P47884 311 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 RIPPLY3P57055 190 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF648Q5T619 568 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SSX8Q7RTT4 187 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SMG9Q9H0W8 520 aaKnown RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 TRBV11-1A0A0K0K1C0 115 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 A8MWL6 223 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SLC17A2O00624 439 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF737O75373 536 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 TEAD2Q15562 447 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 FAM219AQ8IW50 185 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 OLIG1Q8TAK6 271 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 POM121Q96HA1 1249 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 OCIAD1Q9NX40 245 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 GNG12Q9UBI6 72 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 USP21Q9UK80 565 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 FN1P02751 2386 aaKnown RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 C7orf66A4D0T2 115 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 ANTXRLA6NF34 631 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 OR6C76A6NM76 312 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 KDM4EB2RXH2 506 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 PPP1R3DO95685 299 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 FGF2P09038 288 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 MRPL58Q14197 206 aaKnown RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 C1QL4Q86Z23 238 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 GPR152Q8TDT2 470 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SLC38A5Q8WUX1 472 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 POM121L2Q96KW2 1035 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 DCBLD2Q96PD2 775 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 MENTQ9BUN1 341 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 AKIRIN1Q9H9L7 192 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 CMC2Q9NRP2 79 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 LANCL2Q9NS86 450 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 PMS2P1A4D2B8 440 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 NPIPB9F8W1W9 429 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SRSF4Q08170 494 aaKnown RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 PPP1R8Q12972 351 aaKnown RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 PDGFRLQ15198 375 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 RGMBQ6NW40 437 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 LHFPL4Q7Z7J7 247 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 NUDT10Q8NFP7 164 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 OR11L1Q8NGX0 322 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 COL2A1P02458 1487 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 C7orf77A4D0Y5 90 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 LILRB3O75022 631 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF253O75346 499 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 ROM1Q03395 351 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 OLIG2Q13516 323 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 PIN1Q13526 163 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 SPSB1Q96BD6 273 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 GPR78Q96P69 363 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 GPX7Q96SL4 187 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-201ENST00000297405 WDR18Q9BV38 432 aa4.39□□□□□ -1.71
CSMD3-201ENST00000297405 CYSLTR1Q9Y271 337 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms