RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 CLEC1AQ8NC01 280 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 ASB5Q8WWX0 329 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 C19orf12Q9NSK7 152 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 SSSCA1O60232 199 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 MSR1P21757 451 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 IDH3GP51553 393 aaPredicted RBP4.11□□□□□ -1.75
VPS13C-201ENST00000249837 SSX2Q16385 188 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 PNLIPRP3Q17RR3 467 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 SLC16A13Q7RTY0 426 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 CATSPERDQ86XM0 798 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 RPS4Y2Q8TD47 263 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 REEP6Q96HR9 211 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 RNF150Q9ULK6 438 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 TMEM127O75204 238 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 GP1BAP07359 652 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 HOXC4P09017 264 aaPredicted RBP4.11□□□□□ -1.75
VPS13C-201ENST00000249837 BCKDHBP21953 392 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 PPIAP62937 165 aaKnown RBP4.11□□□□□ -1.75
VPS13C-201ENST00000249837 CLEC12BQ2HXU8 276 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 ABHD17BQ5VST6 288 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 SHISA5Q8N114 240 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 SLC25A43Q8WUT9 341 aaPredicted RBP4.11□□□□□ -1.75
VPS13C-201ENST00000249837 FRZBQ92765 325 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 FTCDNL1E5RQL4 147 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 ONECUT2O95948 504 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 NRASP01111 189 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 RPS16P62249 146 aaKnown RBP4.11□□□□□ -1.75
VPS13C-201ENST00000249837 SNRPEP62304 92 aaKnown RBP4.11□□□□□ -1.75
VPS13C-201ENST00000249837 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.11□□□□□ -1.753e-6■■■□□ 15
VPS13C-201ENST00000249837 EIF2S3LQ2VIR3 472 aaKnown RBP4.11□□□□□ -1.75
VPS13C-201ENST00000249837 ZNF774Q6NX45 483 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 NECAP1Q8NC96 275 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 UQCC2Q9BRT2 126 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 BCO1Q9HAY6 547 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 EML6Q6ZMW3 1958 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 TMEM218A2RU14 115 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 HSPB2A8KAH6 182 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 H3BP45 60 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 ERGP11308 486 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 NME1P15531 152 aaKnown RBP4.11□□□□□ -1.75
VPS13C-201ENST00000249837 ADIRFQ15847 76 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 HSPB2Q16082 182 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 MIDNQ504T8 468 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 TSPO2Q5TGU0 170 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 LCN15Q6UWW0 184 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 C6orf201Q7Z4U5 140 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 ZFP62Q8NB50 900 aaPredicted RBP4.11□□□□□ -1.75
VPS13C-201ENST00000249837 EDAQ92838 391 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 GFOD1Q9NXC2 390 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 SPTY2D1-AS1A0A0U1RR47 76 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 NUDT19A8MXV4 375 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 EFSO43281 561 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 CLDN1O95832 211 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 F12P00748 615 aaPredicted RBP4.11□□□□□ -1.75
VPS13C-201ENST00000249837 IL11P20809 199 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 LIMK1P53667 647 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 RPS4XP62701 263 aaKnown RBP4.11□□□□□ -1.75
VPS13C-201ENST00000249837 SKP2Q13309 424 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 MOGAT2Q3SYC2 334 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 FHL5Q5TD97 284 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 KIRREL1Q96J84 757 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 OR5B12Q96R08 314 aa4.11□□□□□ -1.75
VPS13C-201ENST00000249837 A0A1W2PPC1 479 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 RAB19A4D1S5 217 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 BGLAPP02818 100 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 AADACP22760 399 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 TMEM164Q5U3C3 297 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 IL22RA1Q8N6P7 574 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 AKR7LQ8NHP1 331 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 UQCC1Q9NVA1 299 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 ALG1L2C9J202 215 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 SFTA3P0C7M3 94 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 EIF2S3P41091 472 aaKnown RBP4.1□□□□□ -1.75
VPS13C-201ENST00000249837 ZNF133P52736 654 aaPredicted RBP4.1□□□□□ -1.75
VPS13C-201ENST00000249837 MRPS34P82930 218 aaKnown RBP4.1□□□□□ -1.75
VPS13C-201ENST00000249837 LYSMD4Q5XG99 296 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 FAAP24Q9BTP7 215 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 PIPOXQ9P0Z9 390 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 E5RGE8 158 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 TAAR5O14804 337 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 DEGS1O15121 323 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 JTBO76095 146 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 SERPINA7P05543 415 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 PATE4P0C8F1 98 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 H2BFSP57053 126 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 SLC37A1P57057 533 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 OR5AS1Q8N127 324 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 AGBL5Q8NDL9 886 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 PSMF1Q92530 271 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 TGIF2Q9GZN2 237 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 NECAP2Q9NVZ3 263 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 NSG2Q9Y328 171 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 TRBV5-7A0A0A0MS05 114 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 IFNA10P01566 189 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 IFNA4P05014 189 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 CRHP06850 196 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 DUSP3P51452 185 aaPredicted RBP4.1□□□□□ -1.75
VPS13C-201ENST00000249837 CCL7P80098 99 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 ISXQ2M1V0 245 aa4.1□□□□□ -1.75
VPS13C-201ENST00000249837 HIST2H3AQ71DI3 136 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms