RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TGM4P49221 684 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 GSK3AP49840 483 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 RAB13P51153 203 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 LOXL3P58215 753 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 TIGD6Q17RP2 521 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 LRRC10Q5BKY1 277 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 C11orf87Q6NUJ2 197 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 PGBD2Q6P3X8 592 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 KCTD8Q6ZWB6 473 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 SLC36A1Q7Z2H8 476 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 CMTM4Q8IZR5 234 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 FAM185AQ8N0U4 392 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 SPERTQ8NA61 448 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 ZNRF1Q8ND25 227 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 OR6K6Q8NGW6 343 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 OR4Q3Q8NH05 313 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 SGCDQ92629 289 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 DUS3LQ96G46 650 aaKnown RBP7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 KCNJ15Q99712 375 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 BTBD10Q9BSF8 475 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 RNPEPL1Q9HAU8 725 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 KRCC1Q9NPI7 259 aaPredicted RBP7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 DCAF13Q9NV06 445 aaKnown RBP7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 HAO2Q9NYQ3 351 aa7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 SLC25A10Q9UBX3 287 aaPredicted RBP7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 CAB39Q9Y376 341 aaPredicted RBP7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 NOP16Q9Y3C1 178 aaKnown RBP7.03□□□□□ -1.28
SHKBP1-220ENST00000599716 A0A1W2PRX2 142 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 FAM183AA6NL82 134 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 ZNF850A8MQ14 1090 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 H0YAE9 185 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 XRCC2O43543 280 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 MUC1P15941 1255 aaPredicted RBP7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 SPI1P17947 270 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 COX7A1P24310 79 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 GABRA2P47869 451 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 CEBPDP49716 269 aaPredicted RBP7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 ENTPD1P49961 510 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 UBE2E1P51965 193 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 ZNF121P58317 390 aaPredicted RBP7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 MXRA7P84157 204 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 GUCA2AQ02747 115 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 TSPAN31Q12999 210 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 PRDX4Q13162 271 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 EIF2B1Q14232 305 aaKnown RBP7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 TMEM95Q3KNT9 176 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 METAP1DQ6UB28 335 aaPredicted RBP7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 ZNF788Q6ZQV5 615 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 Q6ZS46 218 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 PRSS45Q7RTY3 260 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 HDXQ7Z353 690 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 LHFPL4Q7Z7J7 247 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 TMEM219Q86XT9 240 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 MKXQ8IYA7 352 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 DYNAPQ8N1N2 210 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 BEND2Q8NDZ0 799 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 TMEM185AQ8NFB2 350 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 OR51G2Q8NGK0 314 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 OR6N2Q8NGY6 317 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 OR2T4Q8NH00 348 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 GNPDA2Q8TDQ7 276 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 HPSE2Q8WWQ2 592 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 CFHR4Q92496 578 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 SPSB4Q96A44 273 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 PHF21AQ96BD5 680 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 OTULINQ96BN8 352 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 PYURFQ96I23 114 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 CLPTM1LQ96KA5 538 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 ZNF488Q96MN9 340 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 RAB3IPQ96QF0 476 aaPredicted RBP7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 HOPXQ9BPY8 73 aaPredicted RBP7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 SP140LQ9H930 580 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 EFCAB1Q9HAE3 211 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 C19orf12Q9NSK7 152 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 ARMC1Q9NVT9 282 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 ABCD2Q9UBJ2 740 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 AP3M1Q9Y2T2 418 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 CDH10Q9Y6N8 788 aa7.02□□□□□ -1.29
SHKBP1-220ENST00000599716 IGKV1D-17A0A075B6S4 117 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 NKX6-3A6NJ46 265 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 ADARB2-AS1A8MUL3 147 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 ZNF878C9JN71 531 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 MPIG6BO95866 241 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 GASTP01350 101 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 CCL3L1P16619 93 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 HSD11B1P28845 292 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 FMO3P31513 532 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 GRK5P34947 590 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 GNALP38405 381 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 KIR2DS4P43632 304 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 LRRC75BQ2VPJ9 315 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 CRIP3Q6Q6R5 217 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 CCBE1Q6UXH8 406 aaPredicted RBP7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 ZNF782Q6ZMW2 699 aaPredicted RBP7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 ERI1Q8IV48 349 aaKnown RBP7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 GALNT4Q8N4A0 578 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 IQCF1Q8N6M8 205 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 OR4M1Q8NGD0 313 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 OR4C13Q8NGP0 309 aa7.01□□□□□ -1.29
SHKBP1-220ENST00000599716 OR5R1Q8NH85 324 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms