RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 DIRC2Q96SL1 478 aa7.03□□□□□ -1.28
VPS13D-211ENST00000543710 GHITMQ9H3K2 345 aa7.03□□□□□ -1.28
VPS13D-211ENST00000543710 MYOZ1Q9NP98 299 aaPredicted RBP7.03□□□□□ -1.28
VPS13D-211ENST00000543710 MTCH1Q9NZJ7 389 aa7.03□□□□□ -1.28
VPS13D-211ENST00000543710 HRH3Q9Y5N1 445 aa7.03□□□□□ -1.28
VPS13D-211ENST00000543710 IFNL4K9M1U5 179 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 WDR1O75083 606 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 NKX2-2O95096 273 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 FGF7P21781 194 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 CDONQ4KMG0 1287 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 SHEQ5VZ18 495 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 C18orf63Q68DL7 685 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 TMEM182Q6ZP80 229 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-211ENST00000543710 MARCH3Q86UD3 253 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 TMEM99Q8N816 258 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 OR8B4Q96RC9 309 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 SMIM3Q9BZL3 60 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 NXF2Q9GZY0 626 aaKnown RBP7.02□□□□□ -1.29
VPS13D-211ENST00000543710 LHX9Q9NQ69 397 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 VSX1Q9NZR4 365 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-211ENST00000543710 PUS1Q9Y606 427 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS13D-211ENST00000543710 V9GYS6 101 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 ANKRD20A5PA0PJZ0 165 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 OR52A4PA6NMU1 304 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 ZNF732B4DXR9 585 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 DNPH1O43598 174 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 INHBBP09529 407 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 HMGA1P17096 107 aaKnown RBP7.02□□□□□ -1.29
VPS13D-211ENST00000543710 CTRB1P17538 263 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 ACKR3P25106 362 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 DSCR9P59020 149 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 PDZK1IP1Q13113 114 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 ADIRFQ15847 76 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 CTRB2Q6GPI1 263 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 OR5M8Q8NGP6 311 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 SLC37A2Q8TED4 501 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 LURAP1Q96LR2 239 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 WWTR1Q9GZV5 400 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 ACKR4Q9NPB9 350 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 SLC25A37Q9NYZ2 338 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 RCL1Q9Y2P8 373 aaKnown RBP7.02□□□□□ -1.29
VPS13D-211ENST00000543710 TMEM210A6NLX4 147 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 H7BYZ3 331 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 CLN5O75503 358 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 IL24Q13007 206 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 RPEL1Q2QD12 228 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 NCR3LG1Q68D85 454 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 PRSS42Q7Z5A4 293 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 C17orf47Q8NEP4 570 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 RPS4Y2Q8TD47 263 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 CT55Q8WUE5 264 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 SECTM1Q8WVN6 248 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 NTN4Q9HB63 628 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 SLC45A2Q9UMX9 530 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 HMX2A2RU54 273 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 POM121CA8CG34 1229 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 CHEK1O14757 476 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 SLC31A2O15432 143 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 GJB3O75712 270 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 SEMG1P04279 462 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 F13BP05160 661 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 OMGP23515 440 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 AKR1C3P42330 323 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 MEOX1P50221 254 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 PPP1CBP62140 327 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 HIST1H3AP68431 136 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 HLXQ14774 488 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-211ENST00000543710 ZIC1Q15915 447 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 SMN1Q16637 294 aaKnown RBP7.02□□□□□ -1.29
VPS13D-211ENST00000543710 SSX9Q7RTT3 188 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 GLCCI1Q86VQ1 547 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 LRRC18Q8N456 261 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 RASD2Q96D21 266 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 C14orf79Q96F83 325 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 SCMH1Q96GD3 660 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 POM121L2Q96KW2 1035 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 ATP5SQ99766 215 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 TMPRSS13Q9BYE2 586 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 SLAMF8Q9P0V8 285 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 GNG13Q9P2W3 67 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 FBXL2Q9UKC9 423 aa7.02□□□□□ -1.29
VPS13D-211ENST00000543710 CLEC3BP05452 202 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 HIST1H1CP16403 213 aaKnown RBP7.01□□□□□ -1.29
VPS13D-211ENST00000543710 TMPRSS9Q7Z410 1059 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 OR4C16Q8NGL9 310 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 OR1J1Q8NGS3 322 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 OR2V1Q8NHB1 315 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 SLCO1C1Q9NYB5 712 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 GNG12Q9UBI6 72 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 SLCO1B1Q9Y6L6 691 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 MYH9P35579 1960 aaKnown RBP7.01□□□□□ -1.29
VPS13D-211ENST00000543710 ARPC3O15145 178 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 TXNL1O43396 289 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 HRO43593 1189 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 CTSDP07339 412 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-211ENST00000543710 EXOSC2Q13868 293 aaKnown RBP7.01□□□□□ -1.29
VPS13D-211ENST00000543710 TTC9BQ8N6N2 239 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 MED20Q9H944 212 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 LINC00862A6NCI5 91 aa7.01□□□□□ -1.29
VPS13D-211ENST00000543710 H3BSH0 61 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms