RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CD2P06729 351 aa12.71□□□□□ -0.37
NUP54-213ENST00000513352 PCMT1P22061 227 aa12.71□□□□□ -0.37
NUP54-213ENST00000513352 EFNA4P52798 201 aa12.71□□□□□ -0.37
NUP54-213ENST00000513352 MZT1Q08AG7 82 aa12.71□□□□□ -0.37
NUP54-213ENST00000513352 UBE2UQ5VVX9 321 aa12.71□□□□□ -0.37
NUP54-213ENST00000513352 TMEM203Q969S6 136 aa12.71□□□□□ -0.37
NUP54-213ENST00000513352 ADAT3Q96EY9 351 aaPredicted RBP12.71□□□□□ -0.37
NUP54-213ENST00000513352 MEGF10Q96KG7 1140 aa12.71□□□□□ -0.37
NUP54-213ENST00000513352 RTL8AQ9BWD3 113 aa12.71□□□□□ -0.37
NUP54-213ENST00000513352 ZNF275Q9NSD4 429 aaPredicted RBP12.71□□□□□ -0.37
NUP54-213ENST00000513352 C14orf119Q9NWQ9 140 aa12.71□□□□□ -0.37
NUP54-213ENST00000513352 ANKRD61A6NGH8 418 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 A6NLC8 198 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 CDC14BO60729 498 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 GATBO75879 557 aaKnown RBP12.7□□□□□ -0.38
NUP54-213ENST00000513352 INMTO95050 263 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 F12P00748 615 aaPredicted RBP12.7□□□□□ -0.38
NUP54-213ENST00000513352 SERPINA3P01011 423 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 HPXP02790 462 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 GRPP07492 148 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 CD55P08174 381 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 ADH4P08319 380 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 DAOP14920 347 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 CPEP16870 476 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 RPS25P62851 125 aaKnown RBP12.7□□□□□ -0.38
NUP54-213ENST00000513352 TESK1Q15569 626 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 YIF1BQ5BJH7 314 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 PRAMEF6Q5VXH4 476 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 Q6ZSR3 168 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 SPERTQ8NA61 448 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 TRMT10AQ8TBZ6 339 aaKnown RBP12.7□□□□□ -0.38
NUP54-213ENST00000513352 UBASH3BQ8TF42 649 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 PP6455Q8WZ26 134 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 C10orf35Q96D05 121 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 RNF170Q96K19 258 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 TREM2Q9NZC2 230 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 IL19Q9UHD0 177 aa12.7□□□□□ -0.38
NUP54-213ENST00000513352 NOTCH2Q04721 2471 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 IGHV1-69-2A0A0G2JMI3 117 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 LYNX1G3V0Z9 82 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 CD1AP06126 327 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 LYNX1P0DP58 116 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 TNFRSF1AP19438 455 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 GPM6AP51674 278 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 TPBGQ13641 420 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 SPRNQ5BIV9 151 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 MOGAT3Q86VF5 341 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 PHC2Q8IXK0 858 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 OR13C9Q8NGT0 318 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 OR5P3Q8WZ94 311 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 TMEM106AQ96A25 262 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 OR14A2Q96R54 314 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 CHST5Q9GZS9 411 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 UFSP2Q9NUQ7 469 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 SLC7A11Q9UPY5 501 aa12.69□□□□□ -0.38
NUP54-213ENST00000513352 DYSFO75923 2080 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 TRBV5-5A0A0J9YX44 114 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 FAM230AA0A1W2PPH8 454 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 A0A1W2PPK0 400 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 hCG_1807616A0A1W2PRN6 198 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 MAGEA13PA6NCF6 341 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 ZNF879B4DU55 563 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 ZNF732B4DXR9 585 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 MAPK3P27361 379 aaPredicted RBP12.68□□□□□ -0.38
NUP54-213ENST00000513352 CD200P41217 278 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 ART1P52961 327 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 GPR50Q13585 617 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 CNN3Q15417 329 aaKnown RBP12.68□□□□□ -0.38
NUP54-213ENST00000513352 CEACAM21Q3KPI0 293 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 Q499Y3 187 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 CLEC2AQ6UVW9 174 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 SERPINA12Q8IW75 414 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 LRRC75A-AS1Q8N1F1 130 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 MS4A15Q8N5U1 240 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 ZNF525Q8N782 197 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 OR5D14Q8NGL3 314 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 HPSE2Q8WWQ2 592 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 RDH5Q92781 318 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 ITPKCQ96DU7 683 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 TAS2R4Q9NYW5 299 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 PPP1R3CQ9UQK1 317 aa12.68□□□□□ -0.38
NUP54-213ENST00000513352 TANC2Q9HCD6 1990 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 LOC100289279A0A1B0GTE1 492 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 A0A1B0GWJ7 208 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 CCRL2O00421 344 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 RGS9O75916 674 aaPredicted RBP12.67□□□□□ -0.38
NUP54-213ENST00000513352 SMIM18P0DKX4 95 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 PAX1P15863 534 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 ATF1P18846 271 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 GABRA5P31644 462 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 THBS2P35442 1172 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 PDLIM4P50479 330 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 RPS11P62280 158 aaKnown RBP eCLIP12.67□□□□□ -0.38
NUP54-213ENST00000513352 PPP3R1P63098 170 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 GNG3P63215 75 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 HNRNPA0Q13151 305 aaKnown RBP12.67□□□□□ -0.38
NUP54-213ENST00000513352 MAB21L1Q13394 359 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 INSL4Q14641 139 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 TRAM1Q15629 374 aa12.67□□□□□ -0.38
NUP54-213ENST00000513352 UBE2V2Q15819 145 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms