RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 MARS2Q96GW9 593 aaKnown RBP12.21□□□□□ -0.45
SKA1-202ENST00000398452 GPER1Q99527 375 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 SOX7Q9BT81 388 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 SLC22A4Q9H015 551 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 PLGRKTQ9HBL7 147 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 NKIRAS2Q9NYR9 191 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 DUSP13Q9UII6 198 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 AK6Q9Y3D8 172 aaKnown RBP12.21□□□□□ -0.45
SKA1-202ENST00000398452 MPC1Q9Y5U8 109 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 V9GY05 133 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 MYO9AB2RTY4 2548 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 LMX1BO60663 402 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 ATF1P18846 271 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 RPS19P39019 145 aaKnown RBP12.2□□□□□ -0.46
SKA1-202ENST00000398452 ERVS71-1P61550 626 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 HNRNPA0Q13151 305 aaKnown RBP12.2□□□□□ -0.46
SKA1-202ENST00000398452 DDI2Q5TDH0 399 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 MEX3BQ6ZN04 569 aaKnown RBP12.2□□□□□ -0.46
SKA1-202ENST00000398452 Q6ZSR3 168 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 ZDHHC23Q8IYP9 409 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 OR5AS1Q8N127 324 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 JAGN1Q8N5M9 183 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 SPSB1Q96BD6 273 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 BORCS8Q96FH0 119 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 S100A13Q99584 98 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 MICU1Q9BPX6 476 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 POFUT1Q9H488 388 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 ZNF442Q9H7R0 627 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 GPR173Q9NS66 373 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 PTTG2Q9NZH5 202 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 CRIM1Q9NZV1 1036 aa12.2□□□□□ -0.46
SKA1-202ENST00000398452 MRPL15Q9P015 296 aaKnown RBP12.2□□□□□ -0.46
SKA1-202ENST00000398452 CCDC59Q9P031 241 aaKnown RBP12.2□□□□□ -0.46
SKA1-202ENST00000398452 PURGQ9UJV8 347 aaKnown RBP12.2□□□□□ -0.46
SKA1-202ENST00000398452 ZNF850A8MQ14 1090 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 NOTOA8MTQ0 251 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 IQCF6A8MYZ5 107 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 TMEM127O75204 238 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 CST4P01036 141 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 ZNF182P17025 639 aaPredicted RBP12.19□□□□□ -0.46
SKA1-202ENST00000398452 KITLGP21583 273 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 ANOS1P23352 680 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 ACKR3P25106 362 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 ATP1B3P54709 279 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 NKX6-1P78426 367 aaPredicted RBP12.19□□□□□ -0.46
SKA1-202ENST00000398452 GUCA2AQ02747 115 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 PRDX4Q13162 271 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 NKPD1Q17RQ9 610 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 SP5Q6BEB4 398 aaPredicted RBP12.19□□□□□ -0.46
SKA1-202ENST00000398452 MZT2AQ6P582 158 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 DMRTC2Q8IXT2 367 aaPredicted RBP12.19□□□□□ -0.46
SKA1-202ENST00000398452 ZNF671Q8TAW3 534 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 SLC25A46Q96AG3 418 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 MRI1Q9BV20 369 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 PPIL3Q9H2H8 161 aaKnown RBP12.19□□□□□ -0.46
SKA1-202ENST00000398452 PLK3Q9H4B4 646 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 CYSLTR2Q9NS75 346 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 CA10Q9NS85 328 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 TMEM100Q9NV29 134 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 CGGBP1Q9UFW8 167 aaPredicted RBP12.19□□□□□ -0.46
SKA1-202ENST00000398452 FZR1Q9UM11 496 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 RHBDD3Q9Y3P4 386 aa12.19□□□□□ -0.46
SKA1-202ENST00000398452 TRAV8-7A0A075B6U6 113 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 SMIM30A4D0T7 59 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 GMDSO60547 372 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 ALX3O95076 343 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 GOSR1O95249 250 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 ALDOBP05062 364 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 IGFBP3P17936 291 aaPredicted RBP12.18□□□□□ -0.46
SKA1-202ENST00000398452 AZGP1P25311 298 aaKnown RBP12.18□□□□□ -0.46
SKA1-202ENST00000398452 ZNF93P35789 620 aaPredicted RBP12.18□□□□□ -0.46
SKA1-202ENST00000398452 MPV17P39210 176 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 FUT6P51993 359 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 CAPZA1P52907 286 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 PSG7Q13046 419 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 OR8G1Q15617 311 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 IDNKQ5T6J7 187 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 CRYBG3Q68DQ2 2970 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 SFXN4Q6P4A7 337 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 LHFPL2Q6ZUX7 228 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 CDH26Q8IXH8 852 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 SPERTQ8NA61 448 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 OR8G5Q8NG78 346 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 MCFD2Q8NI22 146 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 TRMT10AQ8TBZ6 339 aaKnown RBP12.18□□□□□ -0.46
SKA1-202ENST00000398452 DYNC2LI1Q8TCX1 351 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 NPRL2Q8WTW4 380 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 ACOT12Q8WYK0 555 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 SORCS2Q96PQ0 1159 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 SYT3Q9BQG1 590 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 RTL8AQ9BWD3 113 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 DAPK2Q9UIK4 370 aa12.18□□□□□ -0.46
SKA1-202ENST00000398452 FAM230AA0A1W2PPH8 454 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 NCR1O76036 304 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 CYB5AP00167 134 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 CLEC2LP0C7M8 214 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 ZNF250P15622 560 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 CA6P23280 308 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 TNFSF4P23510 183 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 S100A5P33763 92 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms