RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PRF1P14222 555 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 ZNF133P52736 654 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 RPS27AP62979 156 aaKnown RBP16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 HIST1H3AP68431 136 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 ZMYND11Q15326 602 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 HIST2H3PS2Q5TEC6 136 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 C11orf87Q6NUJ2 197 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 ZNF774Q6NX45 483 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 HIST2H3AQ71DI3 136 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 HOGA1Q86XE5 327 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 OR6K3Q8NGY3 331 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 TERB2Q8NHR7 220 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 ASB13Q8WXK3 278 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 MARVELD3Q96A59 401 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 SGCZQ96LD1 299 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 WDR13Q9H1Z4 485 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 GPR173Q9NS66 373 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 DEPPQ9NTK1 212 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 LOXL2Q9Y4K0 774 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 FLVCR1Q9Y5Y0 555 aa16.07■□□□□ 0.16
SHKBP1-201ENST00000291842 PLATP00750 562 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 B4GALT1P15291 398 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 THBS4P35443 961 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 RAC3P60763 192 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 GGNQ86UU5 652 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 ARMC10Q8N2F6 343 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 CT55Q8WUE5 264 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 SGK3Q96BR1 496 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 TUBAL3A6NHL2 446 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 AMY2BP19961 511 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 SRD5A2P31213 254 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 OTX1P32242 354 aaPredicted RBP16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 HGFACQ04756 655 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 FGL1Q08830 312 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 ACER2Q5QJU3 275 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 FAM74A1Q5RGS3 127 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 TMEM65Q6PI78 240 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 SPTSSAQ969W0 71 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 S100A13Q99584 98 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 CHST5Q9GZS9 411 aa16.06■□□□□ 0.16
SHKBP1-201ENST00000291842 TECTAO75443 2155 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 GPR179Q6PRD1 2367 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 PINLYPA6NC86 204 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 C5orf51A6NDU8 294 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 LRRC3CA6NJW4 275 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 GJE1A6NN92 205 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 SGCEO43556 437 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 UBBP0CG47 229 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 TBPP20226 339 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 ACKR3P25106 362 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 FAM27BQ5VT28 67 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 SIGIRRQ6IA17 410 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 LPCAT3Q6P1A2 487 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 PLXDC2Q6UX71 529 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 SLC51BQ86UW2 128 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 NAXEQ8NCW5 288 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 AKR7LQ8NHP1 331 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 VRK1Q99986 396 aaPredicted RBP16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 C5orf66Q9H5L9 145 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 HPNP05981 417 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 GABRR1P24046 479 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 AGTR1P30556 359 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 MRPS34P82930 218 aaKnown RBP16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 SLC9A3R2Q15599 337 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 OR5H2Q8NGV7 314 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 LINC00052Q96N35 136 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 OCSTAMPQ9BR26 566 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 TNFSF18Q9UNG2 199 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 AHCTF1Q8WYP5 2266 aa16.05■□□□□ 0.16
SHKBP1-201ENST00000291842 MFSD2BA6NFX1 497 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 LGALS8O00214 317 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 DUS4LO95620 317 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 NAT2P11245 290 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 NAT1P18440 290 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 RFC3P40938 356 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 RGS19P49795 217 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 SNU13P55769 128 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 SRSF4Q08170 494 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 CHAF1BQ13112 559 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 C6orf15Q6UXA7 325 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 FAM89BQ8N5H3 189 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 CSNK2A3Q8NEV1 391 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 OR10D3Q8NH80 312 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 PP6455Q8WZ26 134 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 ZNF75AQ96N20 296 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 PECRQ9BY49 303 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 KCNMB2Q9Y691 235 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 PCSK5Q92824 1860 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 B4E171 279 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 ANGPTL7O43827 346 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 MTRF1O75570 445 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 DLSTP36957 453 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 TSPAN7P41732 249 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 CLDN15P56746 228 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 PNLIPRP3Q17RR3 467 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 SPINK14Q6IE38 97 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 JMJD6Q6NYC1 403 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 AAED1Q7RTV5 226 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 C6orf201Q7Z4U5 140 aa16.04■□□□□ 0.16
SHKBP1-201ENST00000291842 OR5M9Q8NGP3 310 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms