RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 RAMP1O60894 148 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 RCBTB2O95199 551 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 PRH1P02810 166 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 FAM157BP0CG42 384 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 TMIGD3P0DMS9 266 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 DIO1P49895 249 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 CLDN15P56746 228 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 SIRPAP78324 504 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 RPP30P78346 268 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 EGR4Q05215 589 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 LTBQ06643 244 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 RPL18Q07020 188 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 RAB40BQ12829 278 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 TSPAN31Q12999 210 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 RSU1Q15404 277 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 ZNF674Q2M3X9 581 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 SLC36A2Q495M3 483 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 PABPC1L2AQ5JQF8 200 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 MCEMP1Q8IX19 187 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 CHST4Q8NCG5 386 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 OR2T33Q8NG76 320 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 DCUN1D4Q92564 292 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 ZC3HAV1LQ96H79 300 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 INTS14Q96SY0 518 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 KCNJ15Q99712 375 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 FN3KRPQ9HA64 309 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 PRR13Q9NZ81 148 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 ESPL1Q14674 2120 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 IGKV1D-42A0A075B6H8 117 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 BTBD17A6NE02 478 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 RBBP9O75884 186 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 GPANK1O95872 356 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 UBBP0CG47 229 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 CARD18P57730 90 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 TPBGQ13641 420 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 TBR1Q16650 682 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 LEG1Q6P5S2 330 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 ZNF322Q6U7Q0 402 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 STEAP2Q8NFT2 490 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 S100A16Q96FQ6 103 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 C12orf49Q9H741 205 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 CALHM2Q9HA72 323 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 TCF7L1Q9HCS4 588 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 GFOD1Q9NXC2 390 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 TRAV36DV7A0A075B6V5 113 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 TVP23AA6NH52 213 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 LRRC3CA6NJW4 275 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 RIIAD1A6NNX1 92 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 UBL3O95164 117 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 MBP02144 154 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 MT-ND5P03915 603 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 AMY2AP04746 511 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 GSTM3P21266 225 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 S100A7P31151 101 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 KIAA0141Q14154 515 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 TSC22D1Q15714 1073 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 CLEC12BQ2HXU8 276 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 PRR30Q53SZ7 412 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 TMEM201Q5SNT2 666 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 TGIF2LXQ8IUE1 241 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 POC1BQ8TC44 478 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 UBQLN3Q9H347 655 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 RGCCQ9H4X1 137 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 SLC25A19Q9HC21 320 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 POLR1DQ9Y2S0 133 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 TRGV5A0A0B4J1U4 118 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 A0A0J9YW62 118 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 PLSCR5A0PG75 271 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 TCAPO15273 167 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 NDUFB2O95178 105 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 IFNGR1P15260 489 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 ZNF43P17038 809 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 MDKP21741 143 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 MSX1P28360 303 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 SLC6A6P31641 620 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 ADAM8P78325 824 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 CRMP1Q14194 572 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 PON3Q15166 354 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 ZNF74Q16587 644 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 NKAPLQ5M9Q1 402 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 C1orf94Q6P1W5 598 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 ARHGAP11AQ6P4F7 1023 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 CNEP1R1Q8N9A8 125 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 FNDC9Q8TBE3 224 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 ST8SIA1Q92185 356 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 ARL11Q969Q4 196 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 RBM14Q96PK6 669 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 SELENOIQ9C0D9 397 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 KALRNO60229 2985 aa7.69□□□□□ -1.18
LIMCH1-209ENST00000509277 A0A1B0GTH9 108 aa7.68□□□□□ -1.18
LIMCH1-209ENST00000509277 ZIC3O60481 467 aa7.68□□□□□ -1.18
LIMCH1-209ENST00000509277 SCGB1D2O95969 90 aa7.68□□□□□ -1.18
LIMCH1-209ENST00000509277 HLA-AP01891 365 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-209ENST00000509277 IFI6P09912 130 aa7.68□□□□□ -1.18
LIMCH1-209ENST00000509277 HOXB6P17509 224 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-209ENST00000509277 APOBEC1P41238 236 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-209ENST00000509277 GAS1P54826 345 aa7.68□□□□□ -1.18
LIMCH1-209ENST00000509277 F2RL1P55085 397 aa7.68□□□□□ -1.18
LIMCH1-209ENST00000509277 CLDN17P56750 224 aa7.68□□□□□ -1.18
LIMCH1-209ENST00000509277 DMRTC1Q5HYR2 192 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms