RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 DAP3P51398 398 aaKnown RBP11.3□□□□□ -0.6
VPS52-218ENST00000482399 SSBP1Q04837 148 aaKnown RBP11.3□□□□□ -0.6
VPS52-218ENST00000482399 ANKRD55Q3KP44 614 aa11.3□□□□□ -0.6
VPS52-218ENST00000482399 H1FNTQ75WM6 255 aaPredicted RBP11.3□□□□□ -0.6
VPS52-218ENST00000482399 UEVLDQ8IX04 471 aa11.3□□□□□ -0.6
VPS52-218ENST00000482399 ZDHHC22Q8N966 263 aa11.3□□□□□ -0.6
VPS52-218ENST00000482399 HDHD3Q9BSH5 251 aaPredicted RBP11.3□□□□□ -0.6
VPS52-218ENST00000482399 PPP4R1LQ9P1A2 415 aa11.3□□□□□ -0.6
VPS52-218ENST00000482399 FBXL17Q9UF56 701 aa11.3□□□□□ -0.6
VPS52-218ENST00000482399 PCOLCE2Q9UKZ9 415 aa11.3□□□□□ -0.6
VPS52-218ENST00000482399 YBX2Q9Y2T7 364 aaKnown RBP11.3□□□□□ -0.6
VPS52-218ENST00000482399 OBSL1O75147 1896 aa11.3□□□□□ -0.6
VPS52-218ENST00000482399 ZNF43P17038 809 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 SCAND1P57086 179 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 IKZF1Q13422 519 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 RTL10Q7L3V2 364 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 OR5L1Q8NGL2 311 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 DUSP15Q9H1R2 295 aaPredicted RBP11.29□□□□□ -0.6
VPS52-218ENST00000482399 OR10A2Q9H208 303 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 FAM86C1Q9NVL1 165 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 FANCMQ8IYD8 2048 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 A0A1B0GTI1 187 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 MT-ATP6P00846 226 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 TTRP02766 147 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 FAHP16930 419 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 CX3CR1P49238 355 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 MECP2P51608 486 aaKnown RBP11.29□□□□□ -0.6
VPS52-218ENST00000482399 OR1D5P58170 312 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 YPEL5P62699 121 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 TAF9Q16594 264 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 C6orf201Q7Z4U5 140 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 RNASE11Q8TAA1 199 aaKnown RBP11.29□□□□□ -0.6
VPS52-218ENST00000482399 S100PBPQ96BU1 408 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 IP6K3Q96PC2 410 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 LRRC61Q9BV99 259 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 C5orf66Q9H5L9 145 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 BARX1Q9HBU1 254 aaPredicted RBP11.29□□□□□ -0.6
VPS52-218ENST00000482399 ZNF160Q9HCG1 818 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 A6NIZ1 184 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 GABRG2P18507 467 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 TNFRSF4P43489 277 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 RRADP55042 308 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 RAP1BP61224 184 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 RAP1AP62834 184 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 DMWDQ09019 674 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 FOXF1Q12946 379 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 TMEM176BQ3YBM2 270 aaPredicted RBP11.29□□□□□ -0.6
VPS52-218ENST00000482399 FAM209BQ5JX69 171 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 C9orf50Q5SZB4 431 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 OR9K2Q8NGE7 335 aa11.29□□□□□ -0.6
VPS52-218ENST00000482399 NAA11Q9BSU3 229 aaPredicted RBP11.29□□□□□ -0.6
VPS52-218ENST00000482399 RCL1Q9Y2P8 373 aaKnown RBP11.29□□□□□ -0.6
VPS52-218ENST00000482399 A0A1W2PPE2 198 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 NUDT21O43809 227 aaKnown RBP11.28□□□□□ -0.6
VPS52-218ENST00000482399 TMEM33P57088 247 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 FZD2Q14332 565 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 AWAT1Q58HT5 328 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 PPP1R3BQ86XI6 285 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 C9orf40Q8IXQ3 194 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 TMEM217Q8N7C4 229 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 OR56B1Q8NGI3 324 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 SGK3Q96BR1 496 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 C8orf44Q96CB5 159 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 C2orf50Q96LR7 162 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 SPSB2Q99619 263 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 RNF126Q9BV68 326 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 MIOXQ9UGB7 285 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 CD207Q9UJ71 328 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 B3GALT5Q9Y2C3 310 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 KCNIP3Q9Y2W7 256 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 PCNX3Q9H6A9 2034 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 UMAD1C9J7I0 102 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 TMEM127O75204 238 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 SFT2D2O95562 160 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 TXNDC12O95881 172 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 HIST1H1DP16402 221 aaKnown RBP11.28□□□□□ -0.6
VPS52-218ENST00000482399 SPINK2P20155 84 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 PTAFRP25105 342 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 FOXK1P85037 733 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 MFAP5Q13361 173 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 CACNA1EQ15878 2313 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 C9orf152Q5JTZ5 239 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 PRSS54Q6PEW0 395 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 DHRS11Q6UWP2 260 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 HOXB13Q92826 284 aaPredicted RBP11.28□□□□□ -0.6
VPS52-218ENST00000482399 WWTR1Q9GZV5 400 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 GHRLQ9UBU3 117 aa11.28□□□□□ -0.6
VPS52-218ENST00000482399 SPTY2D1-AS1A0A0U1RR47 76 aa11.27□□□□□ -0.6
VPS52-218ENST00000482399 NDUFA6P56556 154 aa11.27□□□□□ -0.6
VPS52-218ENST00000482399 GABREP78334 506 aa11.27□□□□□ -0.6
VPS52-218ENST00000482399 ZNF674Q2M3X9 581 aa11.27□□□□□ -0.6
VPS52-218ENST00000482399 TMEM182Q6ZP80 229 aaPredicted RBP11.27□□□□□ -0.6
VPS52-218ENST00000482399 PAQR4Q8N4S7 273 aaPredicted RBP11.27□□□□□ -0.6
VPS52-218ENST00000482399 GPBAR1Q8TDU6 330 aa11.27□□□□□ -0.6
VPS52-218ENST00000482399 G6PC2Q9NQR9 355 aa11.27□□□□□ -0.6
VPS52-218ENST00000482399 CACNA1DQ01668 2161 aa11.27□□□□□ -0.6
VPS52-218ENST00000482399 DIDO1Q9BTC0 2240 aaKnown RBP11.27□□□□□ -0.61
VPS52-218ENST00000482399 BORCS7-ASMTA0A0B4J1R7 106 aa11.27□□□□□ -0.61
VPS52-218ENST00000482399 IGHV3-15A0A0B4J1V0 119 aa11.27□□□□□ -0.61
VPS52-218ENST00000482399 FRG2CA6NGY1 282 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms