RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SLC25A53Q5H9E4 307 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 DPY19L4Q7Z388 723 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 ODF3L1Q8IXM7 274 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 DEFB124Q8NES8 71 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 SYNPRQ8TBG9 265 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 NECAB3Q96P71 396 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 NAA11Q9BSU3 229 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 SUCNR1Q9BXA5 334 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 DPH1Q9BZG8 443 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 TCF20Q9UGU0 1960 aaKnown RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 PNPP00491 289 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 MT-ATP6P00846 226 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 IGLV3-19P01714 112 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 CT45A8P0DMV1 189 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 CT45A9P0DMV2 189 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 LIPCP11150 499 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 RPS15AP62244 130 aaKnown RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 FAM189A2Q15884 450 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 CT45A2Q5DJT8 189 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF506Q5JVG8 444 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 MAFIPQ8WZ33 124 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 C7orf77A4D0Y5 90 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 AP4M1O00189 453 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 HSPA12AO43301 675 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 PRKRAO75569 313 aaKnown RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 CSTAP01040 98 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 MC3RP41968 323 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 RAB11BQ15907 218 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 EXT1Q16394 746 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF550Q7Z398 422 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF100Q8IYN0 542 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 CNTNAP3BQ96NU0 1288 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 CNTNAP3Q9BZ76 1288 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 POT1Q9NUX5 634 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 VSIG4Q9Y279 399 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 KIR2DL5BA0A0G2JN68 375 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 KIR2DL5BA0A0G2JPC4 375 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 C5orf67F2Z3F1 127 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 AKR7A3O95154 331 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 TPT1P13693 172 aaKnown RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 RAB4AP20338 218 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 TNFSF4P23510 183 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 FPR2P25090 351 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 RIDAP52758 137 aaKnown RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 RAB5BP61020 215 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 PLCXD2Q0VAA5 305 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 AIMP2Q13155 320 aaKnown RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 PPP1R1AQ13522 171 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 TRIP6Q15654 476 aaKnown RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 WDR38Q5JTN6 314 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 DCST2Q5T1A1 773 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 KIR2DL5AQ8N109 375 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF709Q8N972 641 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 OR51D1Q8NGF3 324 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 TOLLIPQ9H0E2 274 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 LSM5Q9Y4Y9 91 aaKnown RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 A0A0B4J203 849 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 DUXBA0A1W2PPF3 345 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 TMEM210A6NLX4 147 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 SEC14L6B5MCN3 397 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 EEF1E1-BLOC1S5C9J1V9 151 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 SLC25A17O43808 307 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 MMP23AO75900 390 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 MDKP21741 143 aaPredicted RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 PSMB10P40306 273 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 ADPRHP54922 357 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 ERVFRD-1P60508 538 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 SORDQ00796 357 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 DLX2Q07687 328 aaPredicted RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 FBXW12Q6X9E4 464 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 LFNGQ8NES3 379 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 MFSD8Q8NHS3 518 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 DUSP19Q8WTR2 217 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 DCUN1D4Q92564 292 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 AMELYQ99218 206 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 CMSS1Q9BQ75 279 aaKnown RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 C6orf106Q9H6K1 298 aaPredicted RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 IL36GQ9NZH8 169 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 FRS3O43559 492 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 LRP3O75074 770 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 SELLP14151 372 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 AVPR2P30518 371 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 CCR2P41597 374 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 SPCS3P61009 180 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 OR8G1Q15617 311 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 TMEM205Q6UW68 189 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 PLXDC1Q8IUK5 500 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 GAPTQ8N292 157 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 OR10S1Q8NGN2 331 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 OR4K13Q8NH42 304 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 Q96M85 177 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 LPAR4Q99677 370 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 RTBDNQ9BSG5 229 aaPredicted RBP4.74□□□□□ -1.65
SYNE1-220ENST00000471834 SLC7A11Q9UPY5 501 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 WASF3Q9UPY6 502 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 A6NIN4 97 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 C4orf47A7E2U8 309 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 H3BML4 177 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 YPEL1O60688 119 aa4.74□□□□□ -1.65
SYNE1-220ENST00000471834 ALOX12BO75342 701 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms