RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 BTN2A1Q7KYR7 527 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 SLC16A9Q7RTY1 509 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 GALNT4Q8N4A0 578 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 SCCPDHQ8NBX0 429 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 OR9Q2Q8NGE9 314 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 OR56B2PQ8NGI1 322 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 OR51L1Q8NGJ5 315 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 OR10Z1Q8NGY1 313 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 OR2AE1Q8NHA4 323 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 RNF133Q8WVZ7 376 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 SGK3Q96BR1 496 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 REEP6Q96HR9 211 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 NSL1Q96IY1 281 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 C1orf147Q96MC9 270 aaPredicted RBP5.87□□□□□ -1.47
VPS41-208ENST00000448833 HIST1H2AAQ96QV6 131 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 BTBD10Q9BSF8 475 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 RTL8AQ9BWD3 113 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 YY1AP1Q9H869 796 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 MARCH7Q9H992 704 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 ARL8BQ9NVJ2 186 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 N6AMT1Q9Y5N5 214 aa5.87□□□□□ -1.47
VPS41-208ENST00000448833 IGHV3OR16-10A0A075B7F0 116 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 A0A1W2PPH5 198 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 CLPSL1A2RUU4 121 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 NKX6-3A6NJ46 265 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 A6NJY4 79 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 PRR23D1E9PI22 279 aaPredicted RBP5.86□□□□□ -1.47
VPS41-208ENST00000448833 H3BN98 237 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 M0QZ24 198 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 DVL1O14640 695 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 PRODHO43272 600 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 GYPAP02724 150 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 LYNP07948 512 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 FBP1P09467 338 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 PRR23D2P0DMB1 279 aaPredicted RBP5.86□□□□□ -1.47
VPS41-208ENST00000448833 CALB2P22676 271 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 RPS27P42677 84 aaKnown RBP5.86□□□□□ -1.47
VPS41-208ENST00000448833 GSK3AP49840 483 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 RAG2P55895 527 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 GNGT1P63211 74 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 BLMHQ13867 455 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 ATPAF1Q5TC12 328 aaPredicted RBP5.86□□□□□ -1.47
VPS41-208ENST00000448833 OLFML2AQ68BL7 652 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 NCR3LG1Q68D85 454 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 LCN8Q6JVE9 175 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 KCTD18Q6PI47 426 aaPredicted RBP5.86□□□□□ -1.47
VPS41-208ENST00000448833 DEGS2Q6QHC5 323 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 FIP1L1Q6UN15 594 aaKnown RBP5.86□□□□□ -1.47
VPS41-208ENST00000448833 FAM90A1Q86YD7 464 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 ERI1Q8IV48 349 aaKnown RBP5.86□□□□□ -1.47
VPS41-208ENST00000448833 TIGD4Q8IY51 512 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 GCSAMQ8N6F7 178 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 KIR3DL3Q8N743 410 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 OR1M1Q8NGA1 313 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 OR9Q1Q8NGQ5 310 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 OR6N2Q8NGY6 317 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 GIPC3Q8TF64 312 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 LRRC29Q8WV35 223 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 ST8SIA4Q92187 359 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 LHX4Q969G2 390 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 OTULINQ96BN8 352 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 ASB9Q96DX5 294 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 PGAM5Q96HS1 289 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 FEVQ99581 238 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 ABHD6Q9BV23 337 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 SIRPDQ9H106 197 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 C1orf21Q9H246 121 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 DNAJB11Q9UBS4 358 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 RPUSD1Q9UJJ7 312 aaKnown RBP5.86□□□□□ -1.47
VPS41-208ENST00000448833 TMEM14AQ9Y6G1 99 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 U3KQV3 271 aa5.86□□□□□ -1.47
VPS41-208ENST00000448833 hCG_1809904A0A1W2PP81 198 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 A0A1W2PPE2 198 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 A0A1W2PR64 198 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 A0A1W2PRV1 198 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 C22orf46C9J442 243 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 ZNF254O75437 659 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 SOX14O95416 240 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 CST4P01036 141 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 CST1P01037 141 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 GYPBP06028 91 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 SFTPBP07988 381 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 MELTFP08582 738 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 SLC2A1P11166 492 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 ANXA8P13928 327 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 MMP9P14780 707 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 ATP6V1B1P15313 513 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 MDKP21741 143 aaPredicted RBP5.85□□□□□ -1.47
VPS41-208ENST00000448833 OPRL1P41146 370 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 IER3P46695 156 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 MAP2K3P46734 347 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 ZNF121P58317 390 aaPredicted RBP5.85□□□□□ -1.47
VPS41-208ENST00000448833 ACTR3P61158 418 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 ARF6P62330 175 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 ACSM1Q08AH1 577 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 FAM76BQ5HYJ3 339 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 SLC35D3Q5M8T2 416 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 LCN1P1Q5VSP4 162 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 WDR82Q6UXN9 313 aa5.85□□□□□ -1.47
VPS41-208ENST00000448833 FAM57BQ71RH2 274 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms