RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 CYYR1Q96J86 154 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 NECAB3Q96P71 396 aaPredicted RBP16.86■□□□□ 0.29
RTN4-201ENST00000317610 USB1Q9BQ65 265 aaKnown RBP16.86■□□□□ 0.29
RTN4-201ENST00000317610 METTL8Q9H825 291 aaKnown RBP16.86■□□□□ 0.29
RTN4-201ENST00000317610 FER1L5A0AVI2 2057 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 PMS2P1A4D2B8 440 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 LRP3O75074 770 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 CSNK1EP49674 416 aaKnown RBP16.86■□□□□ 0.29
RTN4-201ENST00000317610 MEOX2P50222 304 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 FBXW4P57775 412 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 TAS2R46P59540 309 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 SURF2Q15527 256 aaPredicted RBP16.86■□□□□ 0.29
RTN4-201ENST00000317610 RPL7L1Q6DKI1 246 aaKnown RBP16.86■□□□□ 0.29
RTN4-201ENST00000317610 CMSS1Q9BQ75 279 aaKnown RBP16.86■□□□□ 0.29
RTN4-201ENST00000317610 SEC61A2Q9H9S3 476 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 GPR84Q9NQS5 396 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 ZNF319Q9P2F9 582 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 XIRP2A4UGR9 3374 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 ADAMTS9Q9P2N4 1935 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 VSTM2BA6NLU5 285 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 COLCA2A8K830 154 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 HKR1P10072 659 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 ZNF121P58317 390 aaPredicted RBP16.85■□□□□ 0.29
RTN4-201ENST00000317610 EIF3IQ13347 325 aaKnown RBP16.85■□□□□ 0.29
RTN4-201ENST00000317610 TMEM268Q5VZI3 342 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 OGFOD3Q6PK18 319 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 C16orf47Q6ZP98 133 aaPredicted RBP16.85■□□□□ 0.29
RTN4-201ENST00000317610 CARFQ8N187 725 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 NOXO1Q8NFA2 376 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 OR2AJ1Q8NGZ0 328 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 EMG1Q92979 244 aaKnown RBP16.85■□□□□ 0.29
RTN4-201ENST00000317610 TAF9BQ9HBM6 251 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 MEMO1Q9Y316 297 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 POMT1Q9Y6A1 747 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 FAM157AC9JC47 383 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 FBXO24O75426 580 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 CRTAPO75718 401 aaPredicted RBP16.85■□□□□ 0.29
RTN4-201ENST00000317610 FARS2O95363 451 aaKnown RBP16.85■□□□□ 0.29
RTN4-201ENST00000317610 HCKP08631 526 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 SFTA3P0C7M3 94 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 PGA4P0DJD7 388 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 PGA3P0DJD8 388 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 GIMD1P0DJR0 217 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 GLRA1P23415 457 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 ZNF84P51523 738 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 ARFRP1Q13795 201 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 ADPRHL1Q8NDY3 354 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 RNF138Q8WVD3 245 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 OR5B2Q96R09 309 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 OR10A2Q9H208 303 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 NKX2-4Q9H2Z4 354 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 PNRC2Q9NPJ4 139 aaKnown RBP16.85■□□□□ 0.29
RTN4-201ENST00000317610 PARP11Q9NR21 331 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 ATXN7L1Q9ULK2 861 aaPredicted RBP16.85■□□□□ 0.29
RTN4-201ENST00000317610 VDAC3Q9Y277 283 aa16.85■□□□□ 0.29
RTN4-201ENST00000317610 EFNA2O43921 213 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 MED6O75586 246 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 APOC1P02654 83 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 OR3A2P47893 321 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 KCNJ3P48549 501 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 C14orf28Q4W4Y0 310 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 DOK3Q7L591 496 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 COMMD2Q86X83 199 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 D2HGDHQ8N465 521 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 SFT2D1Q8WV19 159 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 CPNE2Q96FN4 548 aaPredicted RBP16.84■□□□□ 0.29
RTN4-201ENST00000317610 NUDT22Q9BRQ3 303 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 EGLN1Q9GZT9 426 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 PCDHGA1Q9Y5H4 931 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 IGKV1-9A0A0C4DH69 117 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 A0A1B0GX78 115 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 A0A1W2PR77 199 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 ANOS1P23352 680 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 ALDH3B1P43353 468 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 ARL4DP49703 201 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 SNU13P55769 128 aaKnown RBP16.84■□□□□ 0.29
RTN4-201ENST00000317610 CLRN1P58418 232 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 PEA15Q15121 130 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 SLC25A53Q5H9E4 307 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 C1orf189Q5VU69 101 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 SLC25A47Q6Q0C1 308 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 SLC2A4RGQ9NR83 387 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 ASH2LQ9UBL3 628 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 POLR1DQ9Y2S0 133 aa16.84■□□□□ 0.29
RTN4-201ENST00000317610 H3BML4 177 aa16.83■□□□□ 0.28
RTN4-201ENST00000317610 HTR3BO95264 441 aa16.83■□□□□ 0.28
RTN4-201ENST00000317610 CST4P01036 141 aa16.83■□□□□ 0.28
RTN4-201ENST00000317610 IGHG1P01857 330 aa16.83■□□□□ 0.28
RTN4-201ENST00000317610 GAPDHP04406 335 aaKnown RBP16.83■□□□□ 0.28
RTN4-201ENST00000317610 SLC2A1P11166 492 aa16.83■□□□□ 0.28
RTN4-201ENST00000317610 PRF1P14222 555 aa16.83■□□□□ 0.28
RTN4-201ENST00000317610 ZNF708P17019 499 aa16.83■□□□□ 0.28
RTN4-201ENST00000317610 DHPSP49366 369 aaPredicted RBP16.83■□□□□ 0.28
RTN4-201ENST00000317610 CSNK2A1P68400 391 aaPredicted RBP16.83■□□□□ 0.28
RTN4-201ENST00000317610 GABREP78334 506 aa16.83■□□□□ 0.28
RTN4-201ENST00000317610 KCNMB1Q16558 191 aa16.83■□□□□ 0.28
RTN4-201ENST00000317610 DEFB133Q30KQ1 61 aa16.83■□□□□ 0.28
RTN4-201ENST00000317610 CSNK2A3Q8NEV1 391 aa16.83■□□□□ 0.28
RTN4-201ENST00000317610 LYPD6BQ8NI32 183 aa16.83■□□□□ 0.28
RTN4-201ENST00000317610 FAM71F1Q96KD3 344 aaPredicted RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms