RNA–Protein interactions for RNA: ENST00000634348.1

SRSF4-208, Transcript of serine and arginine rich splicing factor 4, human

TSL 5

Gene SRSF4, Length 8,128 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRSF4-208	ENST00000634348	ZNF444	Q8N0Y2	327 aa	Predicted RBP	12.82	□□□□□ -0.36
SRSF4-208	ENST00000634348	MAN1A2	O60476	641 aa		12.82	□□□□□ -0.36
SRSF4-208	ENST00000634348	RGS22	Q8NE09	1264 aa		12.82	□□□□□ -0.36
SRSF4-208	ENST00000634348	SAMM50	Q9Y512	469 aa		12.82	□□□□□ -0.36
SRSF4-208	ENST00000634348	SNX16	P57768	344 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	MAP3K21	Q5TCX8	1036 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	CERS3	Q8IU89	383 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	PALM3	A6NDB9	673 aa	Predicted RBP	12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	HSPA1L	P34931	641 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	ZNF213	O14771	459 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	SKIL	P12757	684 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	TMEM87A	Q8NBN3	555 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	STAG1	Q8WVM7	1258 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	MRPL46	Q9H2W6	279 aa	Known RBP	12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	TXNDC16	Q9P2K2	825 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	ANKRD50	Q9ULJ7	1429 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	TMPO	P42166	694 aa	Known RBP	12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	PHEX	P78562	749 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	TNIP1	Q15025	636 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	ZKSCAN8	Q15776	578 aa	Predicted RBP	12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	KIF1BP	Q96EK5	621 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	TACO1	Q9BSH4	297 aa	Known RBP	12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	RIPOR2	Q9Y4F9	1068 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	SMARCA2	P51531	1590 aa		12.81	□□□□□ -0.36
SRSF4-208	ENST00000634348	HIP1R	O75146	1068 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	KRT13	P13646	458 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	CA8	P35219	290 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	CYLC1	P35663	651 aa	Predicted RBP	12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	CAVIN4	Q5BKX8	364 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	MICU3	Q86XE3	530 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	OSCAR	Q8IYS5	282 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	ADAMTS2	O95450	1211 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	DDX19A	Q9NUU7	478 aa	Known RBP	12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	MYOM3	Q5VTT5	1437 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	GNAT3	A8MTJ3	354 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	MTRF1L	Q9UGC7	380 aa	Known RBP	12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	NUCB1	Q02818	461 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	FRMD4B	Q9Y2L6	1034 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	APOE	P02649	317 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	TNPO1	Q92973	898 aa	Known RBP	12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	LRRC2	Q9BYS8	371 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	FRMD3	A2A2Y4	597 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	HAUS8	Q9BT25	410 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	DAAM1	Q9Y4D1	1078 aa		12.8	□□□□□ -0.36
SRSF4-208	ENST00000634348	PTGS1	P23219	599 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	CNGA1	P29973	690 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	PPP4R3A	Q6IN85	833 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	GSTA5	Q7RTV2	222 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	VSIG1	Q86XK7	387 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	POLE3	Q9NRF9	147 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	FBXO2	Q9UK22	296 aa	Predicted RBP	12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	FCHSD2	O94868	740 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	12.79	□□□□□ -0.36	1e-13	■■■■■ 29.4
SRSF4-208	ENST00000634348	UBLCP1	Q8WVY7	318 aa	Predicted RBP	12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	CCT6B	Q92526	530 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	CCDC194	A0A1B0GVG4	234 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	ARHGEF9	O43307	516 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	GIMAP6	Q6P9H5	292 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	PPP1R21	Q6ZMI0	780 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	SSH1	Q8WYL5	1049 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	GOLGA8A	A7E2F4	631 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	SSRP1	Q08945	709 aa	Known RBP	12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	SYCP3	Q8IZU3	236 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	TCEANC2	Q96MN5	208 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	GOLGA6C	A6NDK9	693 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	ZPR1	O75312	459 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	GOLGA6D	P0CG33	693 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	GOLGA6A	Q9NYA3	693 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	PLEKHH1	Q9ULM0	1364 aa		12.79	□□□□□ -0.36
SRSF4-208	ENST00000634348	TLDC2	A0PJX2	215 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	STARD3NL	O95772	234 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	CABS1	Q96KC9	395 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	ATP5J2-PTCD1	G3V325	749 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	GLRX3	O76003	335 aa	Known RBP	12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	WAPL	Q7Z5K2	1190 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	HAUS1	Q96CS2	278 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	GJB2	P29033	226 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	HPD	P32754	393 aa	Predicted RBP	12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	GRM1	Q13255	1194 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	INF2	Q27J81	1249 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	ZBTB41	Q5SVQ8	909 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	IQCA1	Q86XH1	822 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	ZNF280C	Q8ND82	737 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	IFT81	Q8WYA0	676 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	PHAX	Q9H814	394 aa	Known RBP	12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	TRIM55	Q9BYV6	548 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	ZBTB3	Q9H5J0	574 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	PPARD	Q03181	441 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	TTC19	Q6DKK2	380 aa	Predicted RBP	12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	ARMC9	Q7Z3E5	817 aa		12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	HELB	Q8NG08	1087 aa	Predicted RBP	12.78	□□□□□ -0.36
SRSF4-208	ENST00000634348	AFM	P43652	599 aa		12.77	□□□□□ -0.36
SRSF4-208	ENST00000634348	ZNF354C	Q86Y25	554 aa		12.77	□□□□□ -0.36
SRSF4-208	ENST00000634348	CAPN7	Q9Y6W3	813 aa		12.77	□□□□□ -0.36
SRSF4-208	ENST00000634348	ARID5A	Q03989	594 aa		12.77	□□□□□ -0.36
SRSF4-208	ENST00000634348	YY1AP1	Q9H869	796 aa		12.77	□□□□□ -0.36
SRSF4-208	ENST00000634348	TRMT112	Q9UI30	125 aa	Known RBP	12.77	□□□□□ -0.36
SRSF4-208	ENST00000634348	AKAP2	Q9Y2D5	859 aa		12.77	□□□□□ -0.36
SRSF4-208	ENST00000634348	IFIT5	Q13325	482 aa	Known RBP	12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 162.4 ms