RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, human

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-223	ENST00000611659	PLA2G4A	P47712	749 aa		13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	STK38	Q15208	465 aa		13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	STOX1	Q6ZVD7	989 aa		13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	RIC3	Q7Z5B4	369 aa		13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	LINS1	Q8NG48	757 aa		13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	EID1	Q9Y6B2	187 aa		13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	PTPN21	Q16825	1174 aa		13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	NBPF6	Q5VWK0	638 aa		13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	NEK11	Q8NG66	645 aa		13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	NBPF4	Q96M43	638 aa		13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	KIAA1468	Q9P260	1216 aa		13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	PSD	A5PKW4	1024 aa	Predicted RBP	13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	FMR1NB	Q8N0W7	255 aa	Predicted RBP	13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	LLPH	Q9BRT6	129 aa	Known RBP	13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	EPC1	Q9H2F5	836 aa		13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	TMX1	Q9H3N1	280 aa		13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	DBNL	Q9UJU6	430 aa	Known RBP	13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	CEMIP	Q8WUJ3	1361 aa		13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	CCDC93	Q567U6	631 aa		13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	TEX35	Q5T0J7	233 aa		13.88	□□□□□ -0.19
TPM3-223	ENST00000611659	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	CHD2	O14647	1828 aa	Known RBP	13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	ETF1	P62495	437 aa	Known RBP	13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	GNL2	Q13823	731 aa	Known RBP	13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	MCMDC2	Q4G0Z9	681 aa		13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	DHX32	Q7L7V1	743 aa	Known RBP	13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	CARD6	Q9BX69	1037 aa		13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	KCND1	Q9NSA2	647 aa		13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	DDX58	O95786	925 aa	Known RBP	13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	SLC3A2	P08195	630 aa	Known RBP	13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	MYL6B	P14649	208 aa		13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	GOLGA8F	Q08AF8	430 aa		13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	GOLGA8DP	Q0D2H9	430 aa		13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	TFCP2	Q12800	502 aa		13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	ILDR1	Q86SU0	546 aa	Predicted RBP	13.87	□□□□□ -0.19
TPM3-223	ENST00000611659	LMOD2	Q6P5Q4	547 aa		13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	LRRC59	Q96AG4	307 aa	Known RBP	13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	UTP14A	Q9BVJ6	771 aa	Known RBP	13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	ORC3	Q9UBD5	711 aa	Predicted RBP	13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	CLIC4	Q9Y696	253 aa		13.86	□□□□□ -0.19
TPM3-223	ENST00000611659		A0A0G2JLW4	131 aa		13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	ATP1A3	P13637	1013 aa		13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	CAPN2	P17655	700 aa		13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	EPHA10	Q5JZY3	1008 aa		13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	ZCCHC17	Q9NP64	241 aa	Known RBP	13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	ZNF609	O15014	1411 aa		13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	ADAMTS13	Q76LX8	1427 aa		13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	SERPINC1	P01008	464 aa		13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	ADAL	Q6DHV7	355 aa		13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	CCDC34	Q96HJ3	373 aa		13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	13.86	□□□□□ -0.19
TPM3-223	ENST00000611659	PTPRU	Q92729	1446 aa		13.85	□□□□□ -0.19
TPM3-223	ENST00000611659	FANCC	Q00597	558 aa		13.85	□□□□□ -0.19
TPM3-223	ENST00000611659	C1orf141	Q5JVX7	400 aa		13.85	□□□□□ -0.19
TPM3-223	ENST00000611659	ZBTB9	Q96C00	473 aa		13.85	□□□□□ -0.19
TPM3-223	ENST00000611659	DBNDD2	Q9BQY9	259 aa		13.85	□□□□□ -0.19
TPM3-223	ENST00000611659	ATP5J	P18859	108 aa		13.85	□□□□□ -0.19
TPM3-223	ENST00000611659	CFAP100	Q494V2	611 aa		13.85	□□□□□ -0.19
TPM3-223	ENST00000611659	TNNI3K	Q59H18	835 aa		13.85	□□□□□ -0.19
TPM3-223	ENST00000611659	RAB11FIP4	Q86YS3	637 aa		13.85	□□□□□ -0.19
TPM3-223	ENST00000611659	FPGT-TNNI3K	V9GXZ4	949 aa		13.85	□□□□□ -0.19
TPM3-223	ENST00000611659	HMGB1	P09429	215 aa	Known RBP	13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	NEXN	Q0ZGT2	675 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	IGKV5-2	P06315	115 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	EVC	P57679	992 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	ST5	P78524	1137 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	ATL3	Q6DD88	541 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	CREBRF	Q8IUR6	639 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	PLCD3	Q8N3E9	789 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	JCAD	Q9P266	1359 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	NWD1	Q149M9	1564 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	ZNF202	O95125	648 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	KCNA6	P17658	529 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	PDIA3	P30101	505 aa	Known RBP	13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	UBASH3A	P57075	661 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	FAM193A	P78312	1265 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	HSP90AA4P	Q58FG1	418 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	AKAP4	Q5JQC9	854 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	LINC00301	Q8NCQ3	95 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	MYD88	Q99836	296 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	TRIM34	Q9BYJ4	488 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	GJB4	Q9NTQ9	266 aa		13.84	□□□□□ -0.19
TPM3-223	ENST00000611659	TOPAZ1	Q8N9V7	1692 aa		13.83	□□□□□ -0.2
TPM3-223	ENST00000611659	ZRANB2	O95218	330 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
TPM3-223	ENST00000611659	NEUROD6	Q96NK8	337 aa		13.83	□□□□□ -0.2
TPM3-223	ENST00000611659	RTEL1	Q9NZ71	1219 aa		13.83	□□□□□ -0.2
TPM3-223	ENST00000611659	CARMIL3	Q8ND23	1372 aa		13.83	□□□□□ -0.2
TPM3-223	ENST00000611659	GOLIM4	O00461	696 aa		13.83	□□□□□ -0.2
TPM3-223	ENST00000611659	SPTLC2	O15270	562 aa		13.83	□□□□□ -0.2
TPM3-223	ENST00000611659	CCP110	O43303	1012 aa		13.83	□□□□□ -0.2
TPM3-223	ENST00000611659	NLRP12	P59046	1061 aa		13.83	□□□□□ -0.2
TPM3-223	ENST00000611659	RAD51AP2	Q09MP3	1159 aa		13.83	□□□□□ -0.2
TPM3-223	ENST00000611659	GPHN	Q9NQX3	736 aa	Predicted RBP	13.83	□□□□□ -0.2
TPM3-223	ENST00000611659	PHLPP2	Q6ZVD8	1323 aa		13.82	□□□□□ -0.2
TPM3-223	ENST00000611659	RNMT	O43148	476 aa	Known RBP	13.82	□□□□□ -0.2
TPM3-223	ENST00000611659	OAS2	P29728	719 aa	Known RBP	13.82	□□□□□ -0.2
TPM3-223	ENST00000611659	MARCKS	P29966	332 aa	Predicted RBP	13.82	□□□□□ -0.2
TPM3-223	ENST00000611659	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.82	□□□□□ -0.2
TPM3-223	ENST00000611659	SYNE3	Q6ZMZ3	975 aa		13.82	□□□□□ -0.2
TPM3-223	ENST00000611659	KRBA2	Q6ZNG9	492 aa		13.82	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 130.6 ms