RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 RLBP1P12271 317 aa21.52■■□□□ 1.04
SHKBP1-212ENST00000596163 USP17L1Q7RTZ2 530 aa21.52■■□□□ 1.04
SHKBP1-212ENST00000596163 ZNF804AQ7Z570 1209 aa21.52■■□□□ 1.04
SHKBP1-212ENST00000596163 KLHDC4Q8TBB5 520 aa21.52■■□□□ 1.04
SHKBP1-212ENST00000596163 GPRC5DQ9NZD1 345 aa21.52■■□□□ 1.04
SHKBP1-212ENST00000596163 H7C1D1 291 aa21.51■■□□□ 1.03
SHKBP1-212ENST00000596163 CIAO1O76071 339 aa21.51■■□□□ 1.03
SHKBP1-212ENST00000596163 PDE8BO95263 885 aa21.51■■□□□ 1.03
SHKBP1-212ENST00000596163 EAPPQ56P03 285 aaPredicted RBP21.51■■□□□ 1.03
SHKBP1-212ENST00000596163 USP50Q70EL3 339 aaPredicted RBP21.51■■□□□ 1.03
SHKBP1-212ENST00000596163 TXNRD3Q86VQ6 643 aa21.51■■□□□ 1.03
SHKBP1-212ENST00000596163 LDHDQ86WU2 507 aa21.51■■□□□ 1.03
SHKBP1-212ENST00000596163 PANK1Q8TE04 598 aa21.51■■□□□ 1.03
SHKBP1-212ENST00000596163 COPRSQ9NQ92 184 aa21.51■■□□□ 1.03
SHKBP1-212ENST00000596163 KCNQ5Q9NR82 932 aa21.51■■□□□ 1.03
SHKBP1-212ENST00000596163 ADARB2Q9NS39 739 aaKnown RBP21.51■■□□□ 1.03
SHKBP1-212ENST00000596163 CLEC11AQ9Y240 323 aa21.51■■□□□ 1.03
SHKBP1-212ENST00000596163 EPS15P42566 896 aa21.5■■□□□ 1.03
SHKBP1-212ENST00000596163 CHADLQ6NUI6 762 aa21.5■■□□□ 1.03
SHKBP1-212ENST00000596163 CNOT7Q9UIV1 285 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-212ENST00000596163 SPEF2Q9C093 1822 aa21.5■■□□□ 1.03
SHKBP1-212ENST00000596163 SNAP23O00161 211 aa21.49■■□□□ 1.03
SHKBP1-212ENST00000596163 IL15P40933 162 aaPredicted RBP21.49■■□□□ 1.03
SHKBP1-212ENST00000596163 PDE3AQ14432 1141 aa21.49■■□□□ 1.03
SHKBP1-212ENST00000596163 STRIP1Q5VSL9 837 aa21.49■■□□□ 1.03
SHKBP1-212ENST00000596163 RSBN1LQ6PCB5 846 aaPredicted RBP21.49■■□□□ 1.03
SHKBP1-212ENST00000596163 AGBL3Q8NEM8 1001 aa21.49■■□□□ 1.03
SHKBP1-212ENST00000596163 CD209Q9NNX6 404 aa21.49■■□□□ 1.03
SHKBP1-212ENST00000596163 CEP126Q9P2H0 1117 aa21.49■■□□□ 1.03
SHKBP1-212ENST00000596163 DDX19BQ9UMR2 479 aa21.49■■□□□ 1.03
SHKBP1-212ENST00000596163 SCN4AP35499 1836 aa21.49■■□□□ 1.03
SHKBP1-212ENST00000596163 KLRK1P26718 216 aa21.48■■□□□ 1.03
SHKBP1-212ENST00000596163 SIL1Q9H173 461 aa21.48■■□□□ 1.03
SHKBP1-212ENST00000596163 ZBTB12Q9Y330 459 aaPredicted RBP21.48■■□□□ 1.03
SHKBP1-212ENST00000596163 IFIT1P09914 478 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-212ENST00000596163 HIBADHP31937 336 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-212ENST00000596163 MVPQ14764 893 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-212ENST00000596163 PUM3Q15397 648 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-212ENST00000596163 CAVIN4Q5BKX8 364 aa21.47■■□□□ 1.03
SHKBP1-212ENST00000596163 TTLL5Q6EMB2 1281 aa21.47■■□□□ 1.03
SHKBP1-212ENST00000596163 FBXW7Q969H0 707 aa21.47■■□□□ 1.03
SHKBP1-212ENST00000596163 MYO3BQ8WXR4 1341 aa21.47■■□□□ 1.03
SHKBP1-212ENST00000596163 IRS2Q9Y4H2 1338 aa21.47■■□□□ 1.03
SHKBP1-212ENST00000596163 ATP8B2P98198 1209 aa21.46■■□□□ 1.03
SHKBP1-212ENST00000596163 ATG9AQ7Z3C6 839 aa21.46■■□□□ 1.03
SHKBP1-212ENST00000596163 VPS37DQ86XT2 251 aa21.46■■□□□ 1.03
SHKBP1-212ENST00000596163 MICALL2Q8IY33 904 aa21.46■■□□□ 1.03
SHKBP1-212ENST00000596163 VGLL2Q8N8G2 317 aa21.46■■□□□ 1.03
SHKBP1-212ENST00000596163 PA2G4Q9UQ80 394 aaKnown RBP21.46■■□□□ 1.03
SHKBP1-212ENST00000596163 IL1R1P14778 569 aa21.45■■□□□ 1.02
SHKBP1-212ENST00000596163 HSPA6P17066 643 aa21.45■■□□□ 1.02
SHKBP1-212ENST00000596163 MMP14P50281 582 aa21.45■■□□□ 1.02
SHKBP1-212ENST00000596163 LPIN2Q92539 896 aa21.45■■□□□ 1.02
SHKBP1-212ENST00000596163 COG6Q9Y2V7 657 aa21.45■■□□□ 1.02
SHKBP1-212ENST00000596163 SLC5A1P13866 664 aa21.44■■□□□ 1.02
SHKBP1-212ENST00000596163 GTF2IP78347 998 aa21.44■■□□□ 1.02
SHKBP1-212ENST00000596163 G3BP1Q13283 466 aaKnown RBP eCLIP21.44■■□□□ 1.02
SHKBP1-212ENST00000596163 FAM84BQ96KN1 310 aaPredicted RBP21.44■■□□□ 1.02
SHKBP1-212ENST00000596163 PNMA6EA0A0J9YXQ4 647 aa21.43■■□□□ 1.02
SHKBP1-212ENST00000596163 SASH1O94885 1247 aa21.43■■□□□ 1.02
SHKBP1-212ENST00000596163 POTEIP0CG38 1075 aa21.43■■□□□ 1.02
SHKBP1-212ENST00000596163 POTEJP0CG39 1038 aa21.43■■□□□ 1.02
SHKBP1-212ENST00000596163 GYG1P46976 350 aa21.43■■□□□ 1.02
SHKBP1-212ENST00000596163 DACT2Q5SW24 774 aa21.43■■□□□ 1.02
SHKBP1-212ENST00000596163 OGFOD1Q8N543 542 aa21.43■■□□□ 1.02
SHKBP1-212ENST00000596163 ZNF609O15014 1411 aa21.43■■□□□ 1.02
SHKBP1-212ENST00000596163 USP17L8P0C7I0 530 aa21.42■■□□□ 1.02
SHKBP1-212ENST00000596163 FGFR2P21802 821 aa21.42■■□□□ 1.02
SHKBP1-212ENST00000596163 FBXO33Q7Z6M2 555 aa21.42■■□□□ 1.02
SHKBP1-212ENST00000596163 ZC3H15Q8WU90 426 aaKnown RBP21.42■■□□□ 1.02
SHKBP1-212ENST00000596163 C1orf115Q9H7X2 142 aa21.42■■□□□ 1.02
SHKBP1-212ENST00000596163 AKAP2Q9Y2D5 859 aa21.42■■□□□ 1.02
SHKBP1-212ENST00000596163 FRAT2O75474 233 aaPredicted RBP21.41■■□□□ 1.02
SHKBP1-212ENST00000596163 APLP1P51693 650 aa21.41■■□□□ 1.02
SHKBP1-212ENST00000596163 POLA2Q14181 598 aa21.41■■□□□ 1.02
SHKBP1-212ENST00000596163 ATP2B3Q16720 1220 aa21.41■■□□□ 1.02
SHKBP1-212ENST00000596163 TDRD7Q8NHU6 1098 aaKnown RBP21.41■■□□□ 1.02
SHKBP1-212ENST00000596163 SSH3Q8TE77 659 aa21.41■■□□□ 1.02
SHKBP1-212ENST00000596163 GMLQ99445 158 aa21.41■■□□□ 1.02
SHKBP1-212ENST00000596163 ZNF280AP59817 542 aaPredicted RBP21.4■■□□□ 1.02
SHKBP1-212ENST00000596163 FKBP1AP62942 108 aaKnown RBP21.4■■□□□ 1.02
SHKBP1-212ENST00000596163 CNTROBQ8N137 903 aa21.4■■□□□ 1.02
SHKBP1-212ENST00000596163 HDAC9Q9UKV0 1011 aa21.4■■□□□ 1.02
SHKBP1-212ENST00000596163 OS9Q13438 667 aaPredicted RBP21.39■■□□□ 1.01
SHKBP1-212ENST00000596163 TBC1D10BQ4KMP7 808 aaPredicted RBP21.39■■□□□ 1.01
SHKBP1-212ENST00000596163 RBM26Q5T8P6 1007 aaKnown RBP21.39■■□□□ 1.01
SHKBP1-212ENST00000596163 SAMD7Q7Z3H4 446 aa21.39■■□□□ 1.01
SHKBP1-212ENST00000596163 RPAP2Q8IXW5 612 aaPredicted RBP21.39■■□□□ 1.01
SHKBP1-212ENST00000596163 ZBTB40Q9NUA8 1239 aa21.39■■□□□ 1.01
SHKBP1-212ENST00000596163 GNL3LQ9NVN8 582 aaKnown RBP21.39■■□□□ 1.01
SHKBP1-212ENST00000596163 FAM205AQ6ZU69 1335 aa21.38■■□□□ 1.01
SHKBP1-212ENST00000596163 SHTN1A0MZ66 631 aa21.38■■□□□ 1.01
SHKBP1-212ENST00000596163 KIF4BQ2VIQ3 1234 aa21.38■■□□□ 1.01
SHKBP1-212ENST00000596163 MAP1SQ66K74 1059 aaPredicted RBP21.38■■□□□ 1.01
SHKBP1-212ENST00000596163 CEP85Q6P2H3 762 aa21.38■■□□□ 1.01
SHKBP1-212ENST00000596163 TRPM4Q8TD43 1214 aa21.38■■□□□ 1.01
SHKBP1-212ENST00000596163 PGAP2Q9UHJ9 254 aa21.38■■□□□ 1.01
SHKBP1-212ENST00000596163 HMMRO75330 724 aa21.37■■□□□ 1.01
SHKBP1-212ENST00000596163 SURF6O75683 361 aaKnown RBP21.37■■□□□ 1.01
SHKBP1-212ENST00000596163 BCAMP50895 628 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms