RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 SSH3Q8TE77 659 aa32.01■■■□□ 2.71
TRIM28-204ENST00000594806 IRS2Q9Y4H2 1338 aa32■■■□□ 2.71
TRIM28-204ENST00000594806 PNMA6EA0A0J9YXQ4 647 aa32■■■□□ 2.71
TRIM28-204ENST00000594806 RAD17O75943 681 aa32■■■□□ 2.71
TRIM28-204ENST00000594806 TXNRD3Q86VQ6 643 aa32■■■□□ 2.71
TRIM28-204ENST00000594806 SIL1Q9H173 461 aa32■■■□□ 2.71
TRIM28-204ENST00000594806 C1orf115Q9H7X2 142 aa32■■■□□ 2.71
TRIM28-204ENST00000594806 CEP126Q9P2H0 1117 aa32■■■□□ 2.71
TRIM28-204ENST00000594806 PA2G4Q9UQ80 394 aaKnown RBP32■■■□□ 2.71
TRIM28-204ENST00000594806 PSME4Q14997 1843 aa31.99■■■□□ 2.71
TRIM28-204ENST00000594806 POTECB2RU33 542 aa31.99■■■□□ 2.71
TRIM28-204ENST00000594806 ZNF804AQ7Z570 1209 aa31.99■■■□□ 2.71
TRIM28-204ENST00000594806 SNAP23O00161 211 aa31.98■■■□□ 2.71
TRIM28-204ENST00000594806 PUM3Q15397 648 aaKnown RBP31.98■■■□□ 2.71
TRIM28-204ENST00000594806 SCN9AQ15858 1988 aa31.98■■■□□ 2.71
TRIM28-204ENST00000594806 LMOD1P29536 600 aaPredicted RBP31.97■■■□□ 2.71
TRIM28-204ENST00000594806 CEP85Q6P2H3 762 aa31.97■■■□□ 2.71
TRIM28-204ENST00000594806 RPAP2Q8IXW5 612 aaPredicted RBP31.97■■■□□ 2.71
TRIM28-204ENST00000594806 C16orf71Q8IYS4 520 aaPredicted RBP31.97■■■□□ 2.71
TRIM28-204ENST00000594806 HACL1Q9UJ83 578 aa31.97■■■□□ 2.71
TRIM28-204ENST00000594806 RPS12P25398 132 aaKnown RBP31.96■■■□□ 2.71
TRIM28-204ENST00000594806 KLRK1P26718 216 aa31.96■■■□□ 2.71
TRIM28-204ENST00000594806 CD209Q9NNX6 404 aa31.96■■■□□ 2.71
TRIM28-204ENST00000594806 PSMD14O00487 310 aa31.95■■■□□ 2.71
TRIM28-204ENST00000594806 VIL1P09327 827 aaKnown RBP31.95■■■□□ 2.71
TRIM28-204ENST00000594806 IFIT1P09914 478 aaKnown RBP31.95■■■□□ 2.71
TRIM28-204ENST00000594806 G3BP1Q13283 466 aaKnown RBP eCLIP31.95■■■□□ 2.712e-9■□□□□ 11.3
TRIM28-204ENST00000594806 USP17L3A6NCW0 530 aa31.94■■■□□ 2.7
TRIM28-204ENST00000594806 USP17L4A6NCW7 530 aa31.94■■■□□ 2.7
TRIM28-204ENST00000594806 TOMM70O94826 608 aa31.94■■■□□ 2.7
TRIM28-204ENST00000594806 FGFR2P21802 821 aa31.94■■■□□ 2.7
TRIM28-204ENST00000594806 USP17L1Q7RTZ2 530 aa31.94■■■□□ 2.7
TRIM28-204ENST00000594806 LPIN2Q92539 896 aa31.94■■■□□ 2.7
TRIM28-204ENST00000594806 DPF2Q92785 391 aa31.94■■■□□ 2.7
TRIM28-204ENST00000594806 SLC5A1P13866 664 aa31.93■■■□□ 2.7
TRIM28-204ENST00000594806 IL1R1P14778 569 aa31.93■■■□□ 2.7
TRIM28-204ENST00000594806 SCNN1DP51172 638 aa31.93■■■□□ 2.7
TRIM28-204ENST00000594806 CAVIN4Q5BKX8 364 aa31.93■■■□□ 2.7
TRIM28-204ENST00000594806 KCNQ5Q9NR82 932 aa31.93■■■□□ 2.7
TRIM28-204ENST00000594806 ZNF609O15014 1411 aa31.92■■■□□ 2.7
TRIM28-204ENST00000594806 HIBADHP31937 336 aaKnown RBP31.92■■■□□ 2.7
TRIM28-204ENST00000594806 GMPSP49915 693 aaPredicted RBP31.92■■■□□ 2.7
TRIM28-204ENST00000594806 STRIP1Q5VSL9 837 aa31.92■■■□□ 2.7
TRIM28-204ENST00000594806 TAF1DQ9H5J8 278 aaPredicted RBP31.92■■■□□ 2.7
TRIM28-204ENST00000594806 GPRC5DQ9NZD1 345 aa31.92■■■□□ 2.7
TRIM28-204ENST00000594806 NOP58Q9Y2X3 529 aaKnown RBP31.92■■■□□ 2.7
TRIM28-204ENST00000594806 HMMRO75330 724 aa31.91■■■□□ 2.7
TRIM28-204ENST00000594806 PNMA8AQ86V59 439 aaPredicted RBP31.91■■■□□ 2.7
TRIM28-204ENST00000594806 AGBL3Q8NEM8 1001 aa31.91■■■□□ 2.7
TRIM28-204ENST00000594806 FAM84BQ96KN1 310 aaPredicted RBP31.91■■■□□ 2.7
TRIM28-204ENST00000594806 AKAP2Q9Y2D5 859 aa31.91■■■□□ 2.7
TRIM28-204ENST00000594806 EPHX2P34913 555 aa31.9■■■□□ 2.7
TRIM28-204ENST00000594806 FBXO33Q7Z6M2 555 aa31.9■■■□□ 2.7
TRIM28-204ENST00000594806 ATP2B3Q16720 1220 aa31.89■■■□□ 2.7
TRIM28-204ENST00000594806 RSBN1LQ6PCB5 846 aaPredicted RBP31.89■■■□□ 2.7
TRIM28-204ENST00000594806 VPS37DQ86XT2 251 aa31.89■■■□□ 2.7
TRIM28-204ENST00000594806 RBM46Q8TBY0 533 aaKnown RBP31.89■■■□□ 2.7
TRIM28-204ENST00000594806 MYO3BQ8WXR4 1341 aa31.89■■■□□ 2.7
TRIM28-204ENST00000594806 SURF6O75683 361 aaKnown RBP31.88■■■□□ 2.69
TRIM28-204ENST00000594806 TTLL5Q6EMB2 1281 aa31.88■■■□□ 2.69
TRIM28-204ENST00000594806 GYG1P46976 350 aa31.87■■■□□ 2.69
TRIM28-204ENST00000594806 MMP14P50281 582 aa31.87■■■□□ 2.69
TRIM28-204ENST00000594806 TDRD7Q8NHU6 1098 aaKnown RBP31.87■■■□□ 2.69
TRIM28-204ENST00000594806 H7C1D1 291 aa31.86■■■□□ 2.69
TRIM28-204ENST00000594806 SASH1O94885 1247 aa31.86■■■□□ 2.69
TRIM28-204ENST00000594806 EPS15P42566 896 aa31.86■■■□□ 2.69
TRIM28-204ENST00000594806 HSP90AB4PQ58FF6 505 aa31.86■■■□□ 2.69
TRIM28-204ENST00000594806 DACT2Q5SW24 774 aa31.86■■■□□ 2.69
TRIM28-204ENST00000594806 ADARB2Q9NS39 739 aaKnown RBP31.86■■■□□ 2.69
TRIM28-204ENST00000594806 CNOT7Q9UIV1 285 aaKnown RBP31.86■■■□□ 2.69
TRIM28-204ENST00000594806 ZBTB12Q9Y330 459 aaPredicted RBP31.86■■■□□ 2.69
TRIM28-204ENST00000594806 TFCP2Q12800 502 aa31.85■■■□□ 2.69
TRIM28-204ENST00000594806 OS9Q13438 667 aaPredicted RBP31.85■■■□□ 2.69
TRIM28-204ENST00000594806 USP50Q70EL3 339 aaPredicted RBP31.85■■■□□ 2.69
TRIM28-204ENST00000594806 FKBP1AP62942 108 aaKnown RBP31.84■■■□□ 2.69
TRIM28-204ENST00000594806 GTF2IP78347 998 aa31.84■■■□□ 2.69
TRIM28-204ENST00000594806 ERC1Q8IUD2 1116 aa31.83■■■□□ 2.69
TRIM28-204ENST00000594806 GMLQ99445 158 aa31.83■■■□□ 2.69
TRIM28-204ENST00000594806 GPR108Q9NPR9 543 aa31.83■■■□□ 2.69
TRIM28-204ENST00000594806 ZNF646O15015 1829 aaPredicted RBP31.83■■■□□ 2.69
TRIM28-204ENST00000594806 FAM205AQ6ZU69 1335 aa31.82■■■□□ 2.68
TRIM28-204ENST00000594806 ZBTB22O15209 634 aa31.82■■■□□ 2.68
TRIM28-204ENST00000594806 FSTL1Q12841 308 aa31.82■■■□□ 2.68
TRIM28-204ENST00000594806 AAMPQ13685 434 aa31.82■■■□□ 2.68
TRIM28-204ENST00000594806 LDHDQ86WU2 507 aa31.82■■■□□ 2.68
TRIM28-204ENST00000594806 MICALL2Q8IY33 904 aa31.82■■■□□ 2.68
TRIM28-204ENST00000594806 SMC1BQ8NDV3 1235 aa31.82■■■□□ 2.68
TRIM28-204ENST00000594806 FBXW7Q969H0 707 aa31.82■■■□□ 2.68
TRIM28-204ENST00000594806 BCAMP50895 628 aa31.81■■■□□ 2.68
TRIM28-204ENST00000594806 C1QTNF8P60827 252 aa31.81■■■□□ 2.68
TRIM28-204ENST00000594806 SIRT2Q8IXJ6 389 aa31.81■■■□□ 2.68
TRIM28-204ENST00000594806 GNL3LQ9NVN8 582 aaKnown RBP31.81■■■□□ 2.68
TRIM28-204ENST00000594806 ARAP2Q8WZ64 1704 aa31.8■■■□□ 2.68
TRIM28-204ENST00000594806 A0A1B0GUL7 405 aa31.8■■■□□ 2.68
TRIM28-204ENST00000594806 FRAT2O75474 233 aaPredicted RBP31.79■■■□□ 2.68
TRIM28-204ENST00000594806 USP17L8P0C7I0 530 aa31.79■■■□□ 2.68
TRIM28-204ENST00000594806 EAPPQ56P03 285 aaPredicted RBP31.79■■■□□ 2.68
TRIM28-204ENST00000594806 SUPT16HQ9Y5B9 1047 aaKnown RBP31.79■■■□□ 2.68
TRIM28-204ENST00000594806 ZNF280AP59817 542 aaPredicted RBP31.78■■■□□ 2.68
TRIM28-204ENST00000594806 TIMM10P62072 90 aa31.78■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms