RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 USP17L3A6NCW0 530 aa23.24■■□□□ 1.31
SHKBP1-202ENST00000593764 USP17L4A6NCW7 530 aa23.24■■□□□ 1.31
SHKBP1-202ENST00000593764 EGFRP00533 1210 aa23.24■■□□□ 1.31
SHKBP1-202ENST00000593764 KCNJ4P48050 445 aa23.24■■□□□ 1.31
SHKBP1-202ENST00000593764 C15orf52Q6ZUT6 534 aaKnown RBP23.24■■□□□ 1.31
SHKBP1-202ENST00000593764 USP17L1Q7RTZ2 530 aa23.24■■□□□ 1.31
SHKBP1-202ENST00000593764 SAMD7Q7Z3H4 446 aa23.24■■□□□ 1.31
SHKBP1-202ENST00000593764 CREBZFQ9NS37 354 aa23.24■■□□□ 1.31
SHKBP1-202ENST00000593764 RIPOR2Q9Y4F9 1068 aa23.24■■□□□ 1.31
SHKBP1-202ENST00000593764 INTS3Q68E01 1043 aaKnown RBP23.23■■□□□ 1.31
SHKBP1-202ENST00000593764 AGBL3Q8NEM8 1001 aa23.23■■□□□ 1.31
SHKBP1-202ENST00000593764 ZC3H15Q8WU90 426 aaKnown RBP23.23■■□□□ 1.31
SHKBP1-202ENST00000593764 PSME4Q14997 1843 aa23.23■■□□□ 1.31
SHKBP1-202ENST00000593764 ZNF609O15014 1411 aa23.23■■□□□ 1.31
SHKBP1-202ENST00000593764 A0A1B0GUL6 1792 aa23.22■■□□□ 1.31
SHKBP1-202ENST00000593764 PLIN1O60240 522 aa23.22■■□□□ 1.31
SHKBP1-202ENST00000593764 FMR1Q06787 632 aaKnown RBP eCLIP23.22■■□□□ 1.31
SHKBP1-202ENST00000593764 TNNQ9UQP3 1299 aa23.22■■□□□ 1.31
SHKBP1-202ENST00000593764 IPO8O15397 1037 aaKnown RBP23.21■■□□□ 1.31
SHKBP1-202ENST00000593764 TRIM27P14373 513 aa23.21■■□□□ 1.31
SHKBP1-202ENST00000593764 TBC1D10BQ4KMP7 808 aaPredicted RBP23.21■■□□□ 1.31
SHKBP1-202ENST00000593764 LRRC24Q50LG9 513 aa23.21■■□□□ 1.31
SHKBP1-202ENST00000593764 DACT2Q5SW24 774 aa23.21■■□□□ 1.31
SHKBP1-202ENST00000593764 KLHDC4Q8TBB5 520 aa23.21■■□□□ 1.31
SHKBP1-202ENST00000593764 TMEM88BA6NKF7 163 aa23.2■■□□□ 1.3
SHKBP1-202ENST00000593764 TRAF5O00463 557 aa23.2■■□□□ 1.3
SHKBP1-202ENST00000593764 UBTFL1P0CB47 393 aaPredicted RBP23.2■■□□□ 1.3
SHKBP1-202ENST00000593764 RFX5P48382 616 aaPredicted RBP23.2■■□□□ 1.3
SHKBP1-202ENST00000593764 ZNF280AP59817 542 aaPredicted RBP23.2■■□□□ 1.3
SHKBP1-202ENST00000593764 STRIP1Q5VSL9 837 aa23.2■■□□□ 1.3
SHKBP1-202ENST00000593764 ATF7IPQ6VMQ6 1270 aa23.2■■□□□ 1.3
SHKBP1-202ENST00000593764 MXD3Q9BW11 206 aa23.2■■□□□ 1.3
SHKBP1-202ENST00000593764 CD209Q9NNX6 404 aa23.2■■□□□ 1.3
SHKBP1-202ENST00000593764 RBM26Q5T8P6 1007 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-202ENST00000593764 FRAT1Q92837 279 aaPredicted RBP23.19■■□□□ 1.3
SHKBP1-202ENST00000593764 MEIS3Q99687 375 aa23.19■■□□□ 1.3
SHKBP1-202ENST00000593764 ZNF646O15015 1829 aaPredicted RBP23.18■■□□□ 1.3
SHKBP1-202ENST00000593764 UBE4AQ14139 1066 aa23.18■■□□□ 1.3
SHKBP1-202ENST00000593764 TTLL5Q6EMB2 1281 aa23.18■■□□□ 1.3
SHKBP1-202ENST00000593764 JMYQ8N9B5 988 aa23.18■■□□□ 1.3
SHKBP1-202ENST00000593764 MROH5Q6ZUA9 1318 aa23.17■■□□□ 1.3
SHKBP1-202ENST00000593764 USP17L8P0C7I0 530 aa23.17■■□□□ 1.3
SHKBP1-202ENST00000593764 CST9Q5W186 159 aa23.17■■□□□ 1.3
SHKBP1-202ENST00000593764 GLIS2Q9BZE0 524 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-202ENST00000593764 LRRFIP2Q9Y608 721 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-202ENST00000593764 IL1R1P14778 569 aa23.16■■□□□ 1.3
SHKBP1-202ENST00000593764 GTF2IP78347 998 aa23.16■■□□□ 1.3
SHKBP1-202ENST00000593764 PTPN12Q05209 780 aaKnown RBP23.16■■□□□ 1.3
SHKBP1-202ENST00000593764 KIF4BQ2VIQ3 1234 aa23.16■■□□□ 1.3
SHKBP1-202ENST00000593764 VGLL2Q8N8G2 317 aa23.16■■□□□ 1.3
SHKBP1-202ENST00000593764 CDC37L1Q7L3B6 337 aa23.15■■□□□ 1.3
SHKBP1-202ENST00000593764 FBXW7Q969H0 707 aa23.15■■□□□ 1.3
SHKBP1-202ENST00000593764 CLUAP1Q96AJ1 413 aa23.15■■□□□ 1.3
SHKBP1-202ENST00000593764 METTL24Q5JXM2 366 aa23.14■■□□□ 1.29
SHKBP1-202ENST00000593764 ZKSCAN2Q63HK3 967 aa23.14■■□□□ 1.29
SHKBP1-202ENST00000593764 ZNF804AQ7Z570 1209 aa23.14■■□□□ 1.29
SHKBP1-202ENST00000593764 FAM84BQ96KN1 310 aaPredicted RBP23.14■■□□□ 1.29
SHKBP1-202ENST00000593764 MYOZ2Q9NPC6 264 aa23.14■■□□□ 1.29
SHKBP1-202ENST00000593764 MKRN1Q9UHC7 482 aaKnown RBP23.14■■□□□ 1.29
SHKBP1-202ENST00000593764 ASTN2O75129 1339 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-202ENST00000593764 MYO3BQ8WXR4 1341 aa23.13■■□□□ 1.29
SHKBP1-202ENST00000593764 POLR2AP24928 1970 aaKnown RBP23.13■■□□□ 1.29
SHKBP1-202ENST00000593764 PDE8BO95263 885 aa23.13■■□□□ 1.29
SHKBP1-202ENST00000593764 DLK2Q6UY11 383 aa23.13■■□□□ 1.29
SHKBP1-202ENST00000593764 USP48Q86UV5 1035 aa23.13■■□□□ 1.29
SHKBP1-202ENST00000593764 HDAC5Q9UQL6 1122 aa23.13■■□□□ 1.29
SHKBP1-202ENST00000593764 CNTNAP1P78357 1384 aa23.13■■□□□ 1.29
SHKBP1-202ENST00000593764 EYA2O00167 538 aa23.12■■□□□ 1.29
SHKBP1-202ENST00000593764 GNAI3P08754 354 aa23.12■■□□□ 1.29
SHKBP1-202ENST00000593764 ATG9AQ7Z3C6 839 aa23.12■■□□□ 1.29
SHKBP1-202ENST00000593764 CERS5Q8N5B7 392 aa23.12■■□□□ 1.29
SHKBP1-202ENST00000593764 GYG1P46976 350 aa23.11■■□□□ 1.29
SHKBP1-202ENST00000593764 SCARF1Q14162 830 aa23.11■■□□□ 1.29
SHKBP1-202ENST00000593764 TMEM57Q8N5G2 664 aa23.11■■□□□ 1.29
SHKBP1-202ENST00000593764 TRPM7Q96QT4 1865 aa23.11■■□□□ 1.29
SHKBP1-202ENST00000593764 SASH1O94885 1247 aa23.1■■□□□ 1.29
SHKBP1-202ENST00000593764 HIBADHP31937 336 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-202ENST00000593764 KRT26Q7Z3Y9 468 aa23.1■■□□□ 1.29
SHKBP1-202ENST00000593764 FBXO33Q7Z6M2 555 aa23.1■■□□□ 1.29
SHKBP1-202ENST00000593764 TDRD7Q8NHU6 1098 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-202ENST00000593764 DCPSQ96C86 337 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-202ENST00000593764 GGA3Q9NZ52 723 aa23.1■■□□□ 1.29
SHKBP1-202ENST00000593764 RASSF10A6NK89 507 aa23.09■■□□□ 1.29
SHKBP1-202ENST00000593764 CELF2O95319 508 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-202ENST00000593764 FGFR2P21802 821 aa23.09■■□□□ 1.29
SHKBP1-202ENST00000593764 KIAA0825Q8IV33 1275 aa23.09■■□□□ 1.29
SHKBP1-202ENST00000593764 OGFOD1Q8N543 542 aa23.09■■□□□ 1.29
SHKBP1-202ENST00000593764 MMP14P50281 582 aa23.08■■□□□ 1.29
SHKBP1-202ENST00000593764 NBPF9Q3BBW0 867 aa23.08■■□□□ 1.29
SHKBP1-202ENST00000593764 FBXO3Q9UK99 471 aa23.08■■□□□ 1.29
SHKBP1-202ENST00000593764 ABT1Q9ULW3 272 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-202ENST00000593764 PA2G4Q9UQ80 394 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-202ENST00000593764 FAM205AQ6ZU69 1335 aa23.08■■□□□ 1.28
SHKBP1-202ENST00000593764 ADM5C9JUS6 153 aa23.07■■□□□ 1.28
SHKBP1-202ENST00000593764 WNT10BO00744 389 aa23.07■■□□□ 1.28
SHKBP1-202ENST00000593764 CIAO1O76071 339 aa23.07■■□□□ 1.28
SHKBP1-202ENST00000593764 RLBP1P12271 317 aa23.07■■□□□ 1.28
SHKBP1-202ENST00000593764 VEGFBP49765 207 aa23.07■■□□□ 1.28
SHKBP1-202ENST00000593764 FKBP1AP62942 108 aaKnown RBP23.07■■□□□ 1.28
SHKBP1-202ENST00000593764 MTX1Q13505 466 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms