RNA–Protein interactions for RNA: ENST00000589788.1

SDF2-208, Transcript of stromal cell derived factor 2, humanhuman

TSL 2

Gene SDF2, Length 1,342 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-208ENST00000589788 ALDH1L1O75891 902 aa13.12□□□□□ -0.31
SDF2-208ENST00000589788 RPS8P62241 208 aaKnown RBP13.12□□□□□ -0.31
SDF2-208ENST00000589788 DPP8Q6V1X1 898 aaPredicted RBP13.12□□□□□ -0.31
SDF2-208ENST00000589788 MPNDQ8N594 471 aa13.12□□□□□ -0.31
SDF2-208ENST00000589788 SUPT20HQ8NEM7 779 aa13.12□□□□□ -0.31
SDF2-208ENST00000589788 JDP2Q8WYK2 163 aa13.12□□□□□ -0.31
SDF2-208ENST00000589788 CELF1Q92879 486 aaKnown RBP13.12□□□□□ -0.31
SDF2-208ENST00000589788 SRCIN1Q9C0H9 1055 aa13.12□□□□□ -0.31
SDF2-208ENST00000589788 SNED1Q8TER0 1413 aa13.11□□□□□ -0.31
SDF2-208ENST00000589788 POTEJP0CG39 1038 aa13.11□□□□□ -0.31
SDF2-208ENST00000589788 SLC51AQ86UW1 340 aa13.11□□□□□ -0.31
SDF2-208ENST00000589788 LARGE2Q8N3Y3 721 aa13.11□□□□□ -0.31
SDF2-208ENST00000589788 TTLL11Q8NHH1 800 aa13.11□□□□□ -0.31
SDF2-208ENST00000589788 CDC5LQ99459 802 aaKnown RBP13.11□□□□□ -0.31
SDF2-208ENST00000589788 NMRK2Q9NPI5 230 aa13.11□□□□□ -0.31
SDF2-208ENST00000589788 SEC31BQ9NQW1 1179 aa13.11□□□□□ -0.31
SDF2-208ENST00000589788 C9orf78Q9NZ63 289 aaPredicted RBP13.11□□□□□ -0.31
SDF2-208ENST00000589788 PPIP5K2O43314 1243 aa13.1□□□□□ -0.31
SDF2-208ENST00000589788 ANKRD18AQ8IVF6 992 aa13.1□□□□□ -0.31
SDF2-208ENST00000589788 C16orf71Q8IYS4 520 aaPredicted RBP13.1□□□□□ -0.31
SDF2-208ENST00000589788 PLA2G12BQ9BX93 195 aa13.1□□□□□ -0.31
SDF2-208ENST00000589788 LRRC37AA6NMS7 1700 aa13.09□□□□□ -0.31
SDF2-208ENST00000589788 ZBED9Q6R2W3 1325 aa13.09□□□□□ -0.31
SDF2-208ENST00000589788 GRM8O00222 908 aa13.09□□□□□ -0.31
SDF2-208ENST00000589788 CASP7P55210 303 aa13.09□□□□□ -0.31
SDF2-208ENST00000589788 NIM1KQ8IY84 436 aa13.09□□□□□ -0.31
SDF2-208ENST00000589788 VPS33BQ9H267 617 aa13.09□□□□□ -0.31
SDF2-208ENST00000589788 GREM2Q9H772 168 aa13.09□□□□□ -0.31
SDF2-208ENST00000589788 RRAGCQ9HB90 399 aa13.09□□□□□ -0.31
SDF2-208ENST00000589788 NSFL1CQ9UNZ2 370 aaKnown RBP13.09□□□□□ -0.31
SDF2-208ENST00000589788 RTL9Q8NET4 1388 aa13.08□□□□□ -0.32
SDF2-208ENST00000589788 RARSP54136 660 aaKnown RBP13.08□□□□□ -0.32
SDF2-208ENST00000589788 C1QTNF8P60827 252 aa13.08□□□□□ -0.32
SDF2-208ENST00000589788 AOC3Q16853 763 aa13.08□□□□□ -0.32
SDF2-208ENST00000589788 YTHDC1Q96MU7 727 aaKnown RBP13.08□□□□□ -0.32
SDF2-208ENST00000589788 RTFDC1Q9BY42 306 aaPredicted RBP13.08□□□□□ -0.32
SDF2-208ENST00000589788 COL4A1P02462 1669 aa13.07□□□□□ -0.32
SDF2-208ENST00000589788 SPEF2Q9C093 1822 aa13.07□□□□□ -0.32
SDF2-208ENST00000589788 C6orf229H3BNL8 230 aa13.07□□□□□ -0.32
SDF2-208ENST00000589788 DDNO94850 711 aaPredicted RBP13.07□□□□□ -0.32
SDF2-208ENST00000589788 VEGFAP15692 232 aaPredicted RBP13.07□□□□□ -0.32
SDF2-208ENST00000589788 EIF6P56537 245 aaKnown RBP13.07□□□□□ -0.32
SDF2-208ENST00000589788 GPSM2P81274 684 aa13.07□□□□□ -0.32
SDF2-208ENST00000589788 API5Q9BZZ5 524 aaKnown RBP13.07□□□□□ -0.32
SDF2-208ENST00000589788 ANKIB1Q9P2G1 1089 aa13.07□□□□□ -0.32
SDF2-208ENST00000589788 NOB1Q9ULX3 412 aaKnown RBP13.07□□□□□ -0.32
SDF2-208ENST00000589788 CHMP3Q9Y3E7 222 aa13.07□□□□□ -0.32
SDF2-208ENST00000589788 KIF16BQ96L93 1317 aa13.07□□□□□ -0.32
SDF2-208ENST00000589788 WDR90Q96KV7 1748 aa13.06□□□□□ -0.32
SDF2-208ENST00000589788 FZD9O00144 591 aa13.06□□□□□ -0.32
SDF2-208ENST00000589788 TRIM66O15016 1216 aa13.06□□□□□ -0.32
SDF2-208ENST00000589788 CSF1RP07333 972 aa13.06□□□□□ -0.32
SDF2-208ENST00000589788 ITGA6P23229 1130 aa13.06□□□□□ -0.32
SDF2-208ENST00000589788 IGHMBP2P38935 993 aaKnown RBP13.06□□□□□ -0.32
SDF2-208ENST00000589788 KIAA2012Q0VF49 1180 aa13.06□□□□□ -0.32
SDF2-208ENST00000589788 FAM161AQ3B820 660 aa13.06□□□□□ -0.32
SDF2-208ENST00000589788 KRI1Q8N9T8 703 aaKnown RBP13.06□□□□□ -0.32
SDF2-208ENST00000589788 EYA3Q99504 573 aa13.06□□□□□ -0.32
SDF2-208ENST00000589788 PCDHGA4Q9Y5G9 962 aa13.06□□□□□ -0.32
SDF2-208ENST00000589788 ZNF541Q9H0D2 1346 aa13.06□□□□□ -0.32
SDF2-208ENST00000589788 ANKRD18BA2A2Z9 1011 aa13.05□□□□□ -0.32
SDF2-208ENST00000589788 POTEB2H3BUK9 544 aa13.05□□□□□ -0.32
SDF2-208ENST00000589788 TOMM70O94826 608 aa13.05□□□□□ -0.32
SDF2-208ENST00000589788 FOXO4P98177 505 aa13.05□□□□□ -0.32
SDF2-208ENST00000589788 IFIT5Q13325 482 aaKnown RBP13.05□□□□□ -0.32
SDF2-208ENST00000589788 WASHC4Q2M389 1173 aa13.05□□□□□ -0.32
SDF2-208ENST00000589788 MPHOSPH8Q99549 860 aa13.05□□□□□ -0.32
SDF2-208ENST00000589788 BSDC1Q9NW68 430 aaPredicted RBP13.05□□□□□ -0.32
SDF2-208ENST00000589788 GGA1Q9UJY5 639 aa13.05□□□□□ -0.32
SDF2-208ENST00000589788 COL4A5P29400 1685 aa13.05□□□□□ -0.32
SDF2-208ENST00000589788 DUOX1Q9NRD9 1551 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 IQCA1LA6NCM1 817 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 IPO8O15397 1037 aaKnown RBP13.04□□□□□ -0.32
SDF2-208ENST00000589788 UFL1O94874 794 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 NBPF7P0C2Y1 421 aaPredicted RBP13.04□□□□□ -0.32
SDF2-208ENST00000589788 CCT4P50991 539 aaKnown RBP13.04□□□□□ -0.32
SDF2-208ENST00000589788 TAF7LQ5H9L4 462 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 LMBR1LQ6UX01 489 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 GPC2Q8N158 579 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 TBC1D16Q8TBP0 767 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 PODXL2Q9NZ53 605 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 POLLQ9UGP5 575 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 ZNRF3Q9ULT6 936 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 GTF3C3Q9Y5Q9 886 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 GJA3Q9Y6H8 435 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 XDHP47989 1333 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 LTBP1Q14766 1721 aa13.04□□□□□ -0.32
SDF2-208ENST00000589788 RIMBP2O15034 1052 aa13.03□□□□□ -0.32
SDF2-208ENST00000589788 FECHP22830 423 aa13.03□□□□□ -0.32
SDF2-208ENST00000589788 MAP2K5Q13163 448 aa13.03□□□□□ -0.32
SDF2-208ENST00000589788 CCDC57Q2TAC2 916 aa13.03□□□□□ -0.32
SDF2-208ENST00000589788 EPHA10Q5JZY3 1008 aa13.03□□□□□ -0.32
SDF2-208ENST00000589788 RBM46Q8TBY0 533 aaKnown RBP13.03□□□□□ -0.32
SDF2-208ENST00000589788 ARHGAP45Q92619 1136 aa13.03□□□□□ -0.32
SDF2-208ENST00000589788 FRAT1Q92837 279 aaPredicted RBP13.03□□□□□ -0.32
SDF2-208ENST00000589788 SUCLG2Q96I99 432 aa13.03□□□□□ -0.32
SDF2-208ENST00000589788 ZC3H12CQ9C0D7 883 aaKnown RBP13.03□□□□□ -0.32
SDF2-208ENST00000589788 UTYO14607 1347 aa13.03□□□□□ -0.32
SDF2-208ENST00000589788 SCN4AP35499 1836 aa13.02□□□□□ -0.32
SDF2-208ENST00000589788 BCAR3O75815 825 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms